Hb_026218_010

Information

Type -
Description -
Location Contig26218: 567-1550
Sequence    

Annotation

kegg
ID rcu:RCOM_2161170
description hypothetical protein
nr
ID XP_002532192.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9T1S3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2161170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27414: 383-1404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026218_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000586_110 0.066307975 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
3 Hb_005731_040 0.0688923679 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
4 Hb_002636_120 0.0835428894 - - Protein bem46, putative [Ricinus communis]
5 Hb_001025_130 0.0879582226 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
6 Hb_001775_140 0.0928985552 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
7 Hb_001709_120 0.0963277648 - - hypothetical protein RCOM_1313640 [Ricinus communis]
8 Hb_001975_110 0.097387695 - - -
9 Hb_084812_010 0.105599548 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
10 Hb_011618_110 0.108727327 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
11 Hb_097292_010 0.1104085974 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
12 Hb_000861_060 0.111564802 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
13 Hb_162472_010 0.1151953903 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006483_070 0.1152669307 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
15 Hb_004195_070 0.119827842 - - cytochrome P450, putative [Ricinus communis]
16 Hb_001136_080 0.1200913243 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
17 Hb_015292_020 0.1206403161 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_003598_020 0.1220175632 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
19 Hb_016911_010 0.1220393655 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
20 Hb_000005_290 0.1235600293 - - Serine carboxypeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_026218_010 Hb_026218_010 Hb_000586_110 Hb_000586_110 Hb_026218_010--Hb_000586_110 Hb_005731_040 Hb_005731_040 Hb_026218_010--Hb_005731_040 Hb_002636_120 Hb_002636_120 Hb_026218_010--Hb_002636_120 Hb_001025_130 Hb_001025_130 Hb_026218_010--Hb_001025_130 Hb_001775_140 Hb_001775_140 Hb_026218_010--Hb_001775_140 Hb_001709_120 Hb_001709_120 Hb_026218_010--Hb_001709_120 Hb_000586_110--Hb_005731_040 Hb_097292_010 Hb_097292_010 Hb_000586_110--Hb_097292_010 Hb_000861_060 Hb_000861_060 Hb_000586_110--Hb_000861_060 Hb_000586_110--Hb_001025_130 Hb_000586_110--Hb_002636_120 Hb_005731_040--Hb_097292_010 Hb_003598_020 Hb_003598_020 Hb_005731_040--Hb_003598_020 Hb_007846_030 Hb_007846_030 Hb_005731_040--Hb_007846_030 Hb_005731_040--Hb_000861_060 Hb_011618_110 Hb_011618_110 Hb_002636_120--Hb_011618_110 Hb_001975_110 Hb_001975_110 Hb_002636_120--Hb_001975_110 Hb_011853_020 Hb_011853_020 Hb_002636_120--Hb_011853_020 Hb_000003_370 Hb_000003_370 Hb_002636_120--Hb_000003_370 Hb_096027_010 Hb_096027_010 Hb_002636_120--Hb_096027_010 Hb_001025_130--Hb_001709_120 Hb_015292_020 Hb_015292_020 Hb_001025_130--Hb_015292_020 Hb_006483_070 Hb_006483_070 Hb_001025_130--Hb_006483_070 Hb_002902_060 Hb_002902_060 Hb_001025_130--Hb_002902_060 Hb_162472_010 Hb_162472_010 Hb_001025_130--Hb_162472_010 Hb_000934_120 Hb_000934_120 Hb_001775_140--Hb_000934_120 Hb_016911_010 Hb_016911_010 Hb_001775_140--Hb_016911_010 Hb_009062_020 Hb_009062_020 Hb_001775_140--Hb_009062_020 Hb_016734_110 Hb_016734_110 Hb_001775_140--Hb_016734_110 Hb_001136_080 Hb_001136_080 Hb_001775_140--Hb_001136_080 Hb_001623_560 Hb_001623_560 Hb_001775_140--Hb_001623_560 Hb_001709_120--Hb_015292_020 Hb_001709_120--Hb_002902_060 Hb_174639_010 Hb_174639_010 Hb_001709_120--Hb_174639_010 Hb_001056_040 Hb_001056_040 Hb_001709_120--Hb_001056_040 Hb_001709_120--Hb_006483_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.612292 4.72034 8.30636 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0531242 0 0 0 1.61947

CAGE analysis