Hb_026228_020

Information

Type -
Description -
Location Contig26228: 15881-17408
Sequence    

Annotation

kegg
ID pvu:PHAVU_002G133800g
description hypothetical protein
nr
ID XP_012070576.1
description PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KTH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05138 PE=4 SV=1
Gene Ontology
ID GO:0016021
description atp-dependent rna helicase dbp73d isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27415: 4528-17587 , PASA_asmbl_27416: 4528-17587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026228_020 0.0 - - PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
2 Hb_005023_030 0.1160374031 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
3 Hb_072922_010 0.1257313874 - - apolipoprotein d, putative [Ricinus communis]
4 Hb_001018_130 0.1263529881 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
5 Hb_001018_110 0.1276159284 - - unnamed protein product [Coffea canephora]
6 Hb_001318_200 0.1294512773 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
7 Hb_001135_140 0.1295622244 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
8 Hb_003992_040 0.131548586 - - Post-illumination chlorophyll fluorescence increase isoform 5 [Theobroma cacao]
9 Hb_000260_600 0.1315910021 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000359_140 0.1316326312 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
11 Hb_024074_040 0.1330764818 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_009851_050 0.1361351507 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
13 Hb_005023_010 0.1383121776 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
14 Hb_001948_130 0.1426715272 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
15 Hb_028707_080 0.1460523657 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
16 Hb_000107_200 0.148632603 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
17 Hb_000850_040 0.1490023002 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000107_080 0.1548924304 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
19 Hb_000212_320 0.1556512232 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
20 Hb_000008_220 0.1558687478 transcription factor TF Family: ARF PREDICTED: auxin response factor 10 [Jatropha curcas]

Gene co-expression network

sample Hb_026228_020 Hb_026228_020 Hb_005023_030 Hb_005023_030 Hb_026228_020--Hb_005023_030 Hb_072922_010 Hb_072922_010 Hb_026228_020--Hb_072922_010 Hb_001018_130 Hb_001018_130 Hb_026228_020--Hb_001018_130 Hb_001018_110 Hb_001018_110 Hb_026228_020--Hb_001018_110 Hb_001318_200 Hb_001318_200 Hb_026228_020--Hb_001318_200 Hb_001135_140 Hb_001135_140 Hb_026228_020--Hb_001135_140 Hb_000107_200 Hb_000107_200 Hb_005023_030--Hb_000107_200 Hb_005023_030--Hb_001135_140 Hb_001386_140 Hb_001386_140 Hb_005023_030--Hb_001386_140 Hb_002067_120 Hb_002067_120 Hb_005023_030--Hb_002067_120 Hb_010565_010 Hb_010565_010 Hb_005023_030--Hb_010565_010 Hb_000300_630 Hb_000300_630 Hb_072922_010--Hb_000300_630 Hb_072922_010--Hb_001018_110 Hb_002304_040 Hb_002304_040 Hb_072922_010--Hb_002304_040 Hb_005023_010 Hb_005023_010 Hb_072922_010--Hb_005023_010 Hb_004129_140 Hb_004129_140 Hb_072922_010--Hb_004129_140 Hb_000146_040 Hb_000146_040 Hb_072922_010--Hb_000146_040 Hb_001018_130--Hb_005023_010 Hb_032050_040 Hb_032050_040 Hb_001018_130--Hb_032050_040 Hb_001018_130--Hb_000107_200 Hb_000146_050 Hb_000146_050 Hb_001018_130--Hb_000146_050 Hb_001018_130--Hb_001018_110 Hb_002445_120 Hb_002445_120 Hb_001018_130--Hb_002445_120 Hb_001018_110--Hb_000300_630 Hb_001018_110--Hb_005023_010 Hb_044736_010 Hb_044736_010 Hb_001018_110--Hb_044736_010 Hb_003994_280 Hb_003994_280 Hb_001018_110--Hb_003994_280 Hb_000207_100 Hb_000207_100 Hb_001318_200--Hb_000207_100 Hb_001318_200--Hb_005023_030 Hb_001318_190 Hb_001318_190 Hb_001318_200--Hb_001318_190 Hb_181810_020 Hb_181810_020 Hb_001318_200--Hb_181810_020 Hb_001318_200--Hb_001135_140 Hb_002110_040 Hb_002110_040 Hb_001135_140--Hb_002110_040 Hb_115107_010 Hb_115107_010 Hb_001135_140--Hb_115107_010 Hb_000359_140 Hb_000359_140 Hb_001135_140--Hb_000359_140 Hb_001135_140--Hb_002067_120 Hb_001135_140--Hb_001018_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.60956 13.0315 5.74538 31.5151 15.1565 28.9052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.88825 10.0242 10.7602 4.87176 10.0897

CAGE analysis