Hb_026239_010

Information

Type -
Description -
Location Contig26239: 24765-29361
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026239_010 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_020334_010 0.0979492557 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_011484_010 0.1967799714 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_061802_010 0.2091381327 - - hypothetical protein VITISV_011986 [Vitis vinifera]
5 Hb_001357_010 0.2219637849 - - -
6 Hb_000046_160 0.2254363422 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
7 Hb_001294_010 0.23117808 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
8 Hb_000329_180 0.2358915545 - - Auxin-induced protein X10A, putative [Ricinus communis]
9 Hb_000169_140 0.2383008481 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
10 Hb_000836_130 0.24049686 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
11 Hb_004734_050 0.2412908867 - - -
12 Hb_000963_140 0.2453179468 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000052_020 0.246725693 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
14 Hb_029510_040 0.2491923174 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
15 Hb_069251_010 0.2516632948 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_003294_100 0.258726798 - - hypothetical protein VITISV_009629 [Vitis vinifera]
17 Hb_001780_120 0.2595678487 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
18 Hb_000210_220 0.262616826 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
19 Hb_181240_010 0.2628805833 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
20 Hb_000853_410 0.263262825 - - -

Gene co-expression network

sample Hb_026239_010 Hb_026239_010 Hb_020334_010 Hb_020334_010 Hb_026239_010--Hb_020334_010 Hb_011484_010 Hb_011484_010 Hb_026239_010--Hb_011484_010 Hb_061802_010 Hb_061802_010 Hb_026239_010--Hb_061802_010 Hb_001357_010 Hb_001357_010 Hb_026239_010--Hb_001357_010 Hb_000046_160 Hb_000046_160 Hb_026239_010--Hb_000046_160 Hb_001294_010 Hb_001294_010 Hb_026239_010--Hb_001294_010 Hb_020334_010--Hb_011484_010 Hb_020334_010--Hb_001357_010 Hb_069251_010 Hb_069251_010 Hb_020334_010--Hb_069251_010 Hb_029510_040 Hb_029510_040 Hb_020334_010--Hb_029510_040 Hb_020334_010--Hb_061802_010 Hb_000399_010 Hb_000399_010 Hb_011484_010--Hb_000399_010 Hb_006132_030 Hb_006132_030 Hb_011484_010--Hb_006132_030 Hb_000853_410 Hb_000853_410 Hb_011484_010--Hb_000853_410 Hb_011484_010--Hb_061802_010 Hb_000210_220 Hb_000210_220 Hb_061802_010--Hb_000210_220 Hb_000329_180 Hb_000329_180 Hb_061802_010--Hb_000329_180 Hb_001575_020 Hb_001575_020 Hb_061802_010--Hb_001575_020 Hb_071947_010 Hb_071947_010 Hb_061802_010--Hb_071947_010 Hb_005505_020 Hb_005505_020 Hb_061802_010--Hb_005505_020 Hb_000061_300 Hb_000061_300 Hb_061802_010--Hb_000061_300 Hb_001357_010--Hb_001294_010 Hb_001189_050 Hb_001189_050 Hb_001357_010--Hb_001189_050 Hb_092107_010 Hb_092107_010 Hb_001357_010--Hb_092107_010 Hb_011030_020 Hb_011030_020 Hb_001357_010--Hb_011030_020 Hb_005162_070 Hb_005162_070 Hb_001357_010--Hb_005162_070 Hb_001357_010--Hb_029510_040 Hb_004324_080 Hb_004324_080 Hb_000046_160--Hb_004324_080 Hb_000046_160--Hb_020334_010 Hb_000608_460 Hb_000608_460 Hb_000046_160--Hb_000608_460 Hb_000046_160--Hb_011484_010 Hb_000046_160--Hb_061802_010 Hb_001294_010--Hb_092107_010 Hb_001014_230 Hb_001014_230 Hb_001294_010--Hb_001014_230 Hb_003294_100 Hb_003294_100 Hb_001294_010--Hb_003294_100 Hb_002307_170 Hb_002307_170 Hb_001294_010--Hb_002307_170 Hb_004056_030 Hb_004056_030 Hb_001294_010--Hb_004056_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0365762 0.0121154 0 0.0065277 0 0.0496104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.156459 0.131338 0.236584 0.0292565 0.140793

CAGE analysis