Hb_026314_020

Information

Type -
Description -
Location Contig26314: 33043-36384
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10050g
description POPTRDRAFT_1108277; hypothetical protein
nr
ID XP_002325507.2
description hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IQ93
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s10050g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27494: 32991-36366 , PASA_asmbl_27495: 33059-36361 , PASA_asmbl_27496: 33029-36366
cDNA
(Sanger)
(ID:Location)		 014_L13.ab1: 33029-36366 , 018_G07.ab1: 33029-36366 , 037_F14.ab1: 33029-36366

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026314_020 0.0 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
2 Hb_005278_020 0.062345768 - - PREDICTED: sorcin-like [Jatropha curcas]
3 Hb_000826_100 0.0802987046 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
4 Hb_002343_060 0.0807874717 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
5 Hb_000005_090 0.0813674352 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
6 Hb_019762_020 0.082007185 - - PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
7 Hb_001318_250 0.0885205809 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
8 Hb_001016_030 0.0886372742 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
9 Hb_000996_140 0.0926090006 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
10 Hb_005667_040 0.0927983604 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
11 Hb_000317_390 0.0933604211 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
12 Hb_004055_070 0.0934596498 - - PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]
13 Hb_000982_090 0.0935933542 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
14 Hb_007009_010 0.0946906662 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
15 Hb_001842_040 0.0948449913 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
16 Hb_004784_020 0.0950640735 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
17 Hb_005867_020 0.0952875383 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
18 Hb_003605_160 0.099543049 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
19 Hb_007441_330 0.0997046145 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
20 Hb_001341_090 0.1000047863 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_026314_020 Hb_026314_020 Hb_005278_020 Hb_005278_020 Hb_026314_020--Hb_005278_020 Hb_000826_100 Hb_000826_100 Hb_026314_020--Hb_000826_100 Hb_002343_060 Hb_002343_060 Hb_026314_020--Hb_002343_060 Hb_000005_090 Hb_000005_090 Hb_026314_020--Hb_000005_090 Hb_019762_020 Hb_019762_020 Hb_026314_020--Hb_019762_020 Hb_001318_250 Hb_001318_250 Hb_026314_020--Hb_001318_250 Hb_012022_120 Hb_012022_120 Hb_005278_020--Hb_012022_120 Hb_017413_010 Hb_017413_010 Hb_005278_020--Hb_017413_010 Hb_001016_030 Hb_001016_030 Hb_005278_020--Hb_001016_030 Hb_001842_040 Hb_001842_040 Hb_005278_020--Hb_001842_040 Hb_004784_020 Hb_004784_020 Hb_005278_020--Hb_004784_020 Hb_003605_160 Hb_003605_160 Hb_000826_100--Hb_003605_160 Hb_000189_240 Hb_000189_240 Hb_000826_100--Hb_000189_240 Hb_007441_330 Hb_007441_330 Hb_000826_100--Hb_007441_330 Hb_008071_020 Hb_008071_020 Hb_000826_100--Hb_008071_020 Hb_026053_020 Hb_026053_020 Hb_000826_100--Hb_026053_020 Hb_004108_070 Hb_004108_070 Hb_002343_060--Hb_004108_070 Hb_000317_390 Hb_000317_390 Hb_002343_060--Hb_000317_390 Hb_002343_060--Hb_008071_020 Hb_001341_090 Hb_001341_090 Hb_002343_060--Hb_001341_090 Hb_004889_020 Hb_004889_020 Hb_002343_060--Hb_004889_020 Hb_000001_060 Hb_000001_060 Hb_000005_090--Hb_000001_060 Hb_000005_090--Hb_004108_070 Hb_002105_100 Hb_002105_100 Hb_000005_090--Hb_002105_100 Hb_006693_020 Hb_006693_020 Hb_000005_090--Hb_006693_020 Hb_004127_020 Hb_004127_020 Hb_000005_090--Hb_004127_020 Hb_004899_370 Hb_004899_370 Hb_000005_090--Hb_004899_370 Hb_002411_040 Hb_002411_040 Hb_019762_020--Hb_002411_040 Hb_019762_020--Hb_017413_010 Hb_003025_040 Hb_003025_040 Hb_019762_020--Hb_003025_040 Hb_019762_020--Hb_005278_020 Hb_019762_020--Hb_004784_020 Hb_000934_250 Hb_000934_250 Hb_001318_250--Hb_000934_250 Hb_001124_090 Hb_001124_090 Hb_001318_250--Hb_001124_090 Hb_152784_010 Hb_152784_010 Hb_001318_250--Hb_152784_010 Hb_001318_250--Hb_000317_390 Hb_000103_320 Hb_000103_320 Hb_001318_250--Hb_000103_320 Hb_001318_250--Hb_001016_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6305 4.41734 11.2665 24.4195 9.50542 17.9673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4473 35.8145 16.0572 7.97484 10.2086

CAGE analysis