Hb_026314_030

Information

Type -
Description -
Location Contig26314: 39021-43906
Sequence    

Annotation

kegg
ID cmo:103498671
description uncharacterized LOC103498671
nr
ID XP_012077039.1
description PREDICTED: transmembrane protein 41B [Jatropha curcas]
swissprot
ID Q55909
description TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1
trembl
ID A0A067LAW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17218 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026314_030 0.0 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
2 Hb_011053_030 0.0917511746 - - -
3 Hb_000866_050 0.1138629998 - - phosphate transporter [Manihot esculenta]
4 Hb_000032_400 0.115092357 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
5 Hb_000834_080 0.1187899082 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
6 Hb_183963_010 0.1236718714 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
7 Hb_005305_020 0.1247720351 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
8 Hb_000495_080 0.1308130644 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
9 Hb_000975_050 0.1310864879 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
10 Hb_004041_030 0.1343807028 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
11 Hb_000189_520 0.1351929041 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
12 Hb_003494_130 0.1376699111 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
13 Hb_021409_190 0.1395838369 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
14 Hb_003778_020 0.1401000625 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_003226_190 0.1413012384 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
16 Hb_000016_200 0.141631223 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003941_030 0.1456240398 - - Protease ecfE, putative [Ricinus communis]
18 Hb_000684_280 0.1464881295 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
19 Hb_000175_050 0.1472583591 - - -
20 Hb_002811_190 0.147781751 - - tRNA pseudouridine synthase d, putative [Ricinus communis]

Gene co-expression network

sample Hb_026314_030 Hb_026314_030 Hb_011053_030 Hb_011053_030 Hb_026314_030--Hb_011053_030 Hb_000866_050 Hb_000866_050 Hb_026314_030--Hb_000866_050 Hb_000032_400 Hb_000032_400 Hb_026314_030--Hb_000032_400 Hb_000834_080 Hb_000834_080 Hb_026314_030--Hb_000834_080 Hb_183963_010 Hb_183963_010 Hb_026314_030--Hb_183963_010 Hb_005305_020 Hb_005305_020 Hb_026314_030--Hb_005305_020 Hb_011053_030--Hb_000834_080 Hb_000175_050 Hb_000175_050 Hb_011053_030--Hb_000175_050 Hb_011053_030--Hb_000032_400 Hb_011053_030--Hb_000866_050 Hb_126917_010 Hb_126917_010 Hb_011053_030--Hb_126917_010 Hb_000058_080 Hb_000058_080 Hb_000866_050--Hb_000058_080 Hb_000189_520 Hb_000189_520 Hb_000866_050--Hb_000189_520 Hb_003935_080 Hb_003935_080 Hb_000866_050--Hb_003935_080 Hb_000866_050--Hb_183963_010 Hb_000107_590 Hb_000107_590 Hb_000866_050--Hb_000107_590 Hb_000032_400--Hb_000189_520 Hb_003941_030 Hb_003941_030 Hb_000032_400--Hb_003941_030 Hb_000684_280 Hb_000684_280 Hb_000032_400--Hb_000684_280 Hb_000032_400--Hb_000175_050 Hb_000834_080--Hb_126917_010 Hb_001628_120 Hb_001628_120 Hb_000834_080--Hb_001628_120 Hb_012799_190 Hb_012799_190 Hb_000834_080--Hb_012799_190 Hb_000975_050 Hb_000975_050 Hb_000834_080--Hb_000975_050 Hb_000834_080--Hb_000175_050 Hb_011053_020 Hb_011053_020 Hb_183963_010--Hb_011053_020 Hb_005228_040 Hb_005228_040 Hb_183963_010--Hb_005228_040 Hb_183963_010--Hb_011053_030 Hb_000023_210 Hb_000023_210 Hb_183963_010--Hb_000023_210 Hb_002150_020 Hb_002150_020 Hb_005305_020--Hb_002150_020 Hb_004041_030 Hb_004041_030 Hb_005305_020--Hb_004041_030 Hb_055690_010 Hb_055690_010 Hb_005305_020--Hb_055690_010 Hb_003124_120 Hb_003124_120 Hb_005305_020--Hb_003124_120 Hb_004672_020 Hb_004672_020 Hb_005305_020--Hb_004672_020 Hb_001307_100 Hb_001307_100 Hb_005305_020--Hb_001307_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0191203 0.130413 0.204061 0.213616 0.0179163 0.0371929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0437083 0.10314 0.12749 0.110311 0.708951

CAGE analysis