Hb_026428_010

Information

Type -
Description -
Location Contig26428: 7320-9562
Sequence    

Annotation

kegg
ID tcc:TCM_043707
description Anti-oxidant 1
nr
ID ADD69807.1
description copper transport protein ATOX1 [Hevea brasiliensis]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID D4P094
description Copper transport protein ATOX1 OS=Hevea brasiliensis GN=CCH PE=2 SV=1
Gene Ontology
ID GO:0009507
description copper transport protein atx1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27678: 7323-9441
cDNA
(Sanger)
(ID:Location)		 038_B13.ab1: 7387-9441

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026428_010 0.0 - - copper transport protein ATOX1 [Hevea brasiliensis]
2 Hb_000803_050 0.1475656266 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
3 Hb_001035_040 0.1495787972 - - unnamed protein product [Coffea canephora]
4 Hb_007120_070 0.1580709559 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
5 Hb_000175_610 0.1609791722 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
6 Hb_000188_130 0.1645089682 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
7 Hb_000107_070 0.1675880344 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
8 Hb_029584_140 0.1721126287 - - senescence-associated family protein [Populus trichocarpa]
9 Hb_001671_060 0.1724488993 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
10 Hb_007140_020 0.1762358505 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
11 Hb_001341_130 0.176263379 - - conserved hypothetical protein [Ricinus communis]
12 Hb_074197_010 0.1820471465 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
13 Hb_003038_180 0.1827239407 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
14 Hb_011004_010 0.1845653033 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
15 Hb_002027_400 0.1876403574 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
16 Hb_000922_170 0.1899202897 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
17 Hb_005321_030 0.1908214946 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4 [Jatropha curcas]
18 Hb_000005_030 0.1918067646 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
19 Hb_004738_010 0.191889559 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
20 Hb_003020_310 0.1925839141 - - glycosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_026428_010 Hb_026428_010 Hb_000803_050 Hb_000803_050 Hb_026428_010--Hb_000803_050 Hb_001035_040 Hb_001035_040 Hb_026428_010--Hb_001035_040 Hb_007120_070 Hb_007120_070 Hb_026428_010--Hb_007120_070 Hb_000175_610 Hb_000175_610 Hb_026428_010--Hb_000175_610 Hb_000188_130 Hb_000188_130 Hb_026428_010--Hb_000188_130 Hb_000107_070 Hb_000107_070 Hb_026428_010--Hb_000107_070 Hb_000235_010 Hb_000235_010 Hb_000803_050--Hb_000235_010 Hb_003050_070 Hb_003050_070 Hb_000803_050--Hb_003050_070 Hb_011004_010 Hb_011004_010 Hb_000803_050--Hb_011004_010 Hb_001671_060 Hb_001671_060 Hb_000803_050--Hb_001671_060 Hb_000575_020 Hb_000575_020 Hb_000803_050--Hb_000575_020 Hb_000920_150 Hb_000920_150 Hb_001035_040--Hb_000920_150 Hb_001035_040--Hb_000107_070 Hb_004738_010 Hb_004738_010 Hb_001035_040--Hb_004738_010 Hb_001741_090 Hb_001741_090 Hb_001035_040--Hb_001741_090 Hb_003038_180 Hb_003038_180 Hb_001035_040--Hb_003038_180 Hb_148121_010 Hb_148121_010 Hb_001035_040--Hb_148121_010 Hb_003020_310 Hb_003020_310 Hb_007120_070--Hb_003020_310 Hb_029584_140 Hb_029584_140 Hb_007120_070--Hb_029584_140 Hb_000178_110 Hb_000178_110 Hb_007120_070--Hb_000178_110 Hb_007120_070--Hb_003038_180 Hb_000062_580 Hb_000062_580 Hb_007120_070--Hb_000062_580 Hb_007120_070--Hb_001035_040 Hb_000175_610--Hb_011004_010 Hb_000260_580 Hb_000260_580 Hb_000175_610--Hb_000260_580 Hb_003371_100 Hb_003371_100 Hb_000175_610--Hb_003371_100 Hb_000742_270 Hb_000742_270 Hb_000175_610--Hb_000742_270 Hb_001507_070 Hb_001507_070 Hb_000175_610--Hb_001507_070 Hb_000175_610--Hb_148121_010 Hb_001341_130 Hb_001341_130 Hb_000188_130--Hb_001341_130 Hb_000045_190 Hb_000045_190 Hb_000188_130--Hb_000045_190 Hb_002759_230 Hb_002759_230 Hb_000188_130--Hb_002759_230 Hb_001153_080 Hb_001153_080 Hb_000188_130--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000188_130--Hb_001045_080 Hb_002529_100 Hb_002529_100 Hb_000188_130--Hb_002529_100 Hb_075449_050 Hb_075449_050 Hb_000107_070--Hb_075449_050 Hb_023214_010 Hb_023214_010 Hb_000107_070--Hb_023214_010 Hb_002000_110 Hb_002000_110 Hb_000107_070--Hb_002000_110 Hb_000107_070--Hb_001741_090 Hb_000107_070--Hb_003020_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
925.974 128.777 148.39 66.8052 140.903 117.277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1962.8 794.992 615.589 133.064 46.6258

CAGE analysis