Hb_026447_030

Information

Type -
Description -
Location Contig26447: 79525-82828
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06500g
description POPTRDRAFT_560578; hypothetical protein
nr
ID XP_002308064.1
description hypothetical protein POPTR_0006s06500g [Populus trichocarpa]
swissprot
ID Q9LFP7
description Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=2 SV=1
trembl
ID B9HA91
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s06500g PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at5g15080

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026447_030 0.0 - - hypothetical protein POPTR_0006s06500g [Populus trichocarpa]
2 Hb_000365_090 0.15010668 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_002027_220 0.153200871 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_004724_430 0.1593332066 - - PREDICTED: F-box protein At2g27310 [Jatropha curcas]
5 Hb_003304_050 0.1611972086 - - PREDICTED: uncharacterized protein LOC105633679 isoform X1 [Jatropha curcas]
6 Hb_000086_200 0.168754812 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_001268_210 0.1722837135 - - zinc finger protein, putative [Ricinus communis]
8 Hb_001128_060 0.179354868 - - amino acid permease, putative [Ricinus communis]
9 Hb_000056_230 0.1819217971 transcription factor TF Family: TCP hypothetical protein JCGZ_15588 [Jatropha curcas]
10 Hb_001832_160 0.1823355438 - - conserved hypothetical protein [Ricinus communis]
11 Hb_033153_020 0.1834899565 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
12 Hb_000056_120 0.1852198376 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_012977_010 0.1958723036 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
14 Hb_000641_030 0.2000038683 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
15 Hb_156144_010 0.2000184438 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
16 Hb_000165_130 0.2005898904 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
17 Hb_004218_070 0.2019371217 - - annexin [Manihot esculenta]
18 Hb_000197_210 0.2023066253 - - phosphatidylinositol transporter, putative [Ricinus communis]
19 Hb_000347_080 0.2046004457 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
20 Hb_003654_010 0.207063286 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]

Gene co-expression network

sample Hb_026447_030 Hb_026447_030 Hb_000365_090 Hb_000365_090 Hb_026447_030--Hb_000365_090 Hb_002027_220 Hb_002027_220 Hb_026447_030--Hb_002027_220 Hb_004724_430 Hb_004724_430 Hb_026447_030--Hb_004724_430 Hb_003304_050 Hb_003304_050 Hb_026447_030--Hb_003304_050 Hb_000086_200 Hb_000086_200 Hb_026447_030--Hb_000086_200 Hb_001268_210 Hb_001268_210 Hb_026447_030--Hb_001268_210 Hb_182516_010 Hb_182516_010 Hb_000365_090--Hb_182516_010 Hb_004375_130 Hb_004375_130 Hb_000365_090--Hb_004375_130 Hb_007722_010 Hb_007722_010 Hb_000365_090--Hb_007722_010 Hb_000365_090--Hb_002027_220 Hb_000365_090--Hb_001268_210 Hb_002027_220--Hb_001268_210 Hb_135810_010 Hb_135810_010 Hb_002027_220--Hb_135810_010 Hb_000120_240 Hb_000120_240 Hb_002027_220--Hb_000120_240 Hb_012977_010 Hb_012977_010 Hb_002027_220--Hb_012977_010 Hb_012390_010 Hb_012390_010 Hb_002027_220--Hb_012390_010 Hb_003654_010 Hb_003654_010 Hb_002027_220--Hb_003654_010 Hb_001956_120 Hb_001956_120 Hb_004724_430--Hb_001956_120 Hb_011537_040 Hb_011537_040 Hb_004724_430--Hb_011537_040 Hb_000347_080 Hb_000347_080 Hb_004724_430--Hb_000347_080 Hb_000165_130 Hb_000165_130 Hb_004724_430--Hb_000165_130 Hb_004724_430--Hb_012977_010 Hb_000176_110 Hb_000176_110 Hb_004724_430--Hb_000176_110 Hb_003687_200 Hb_003687_200 Hb_003304_050--Hb_003687_200 Hb_000641_030 Hb_000641_030 Hb_003304_050--Hb_000641_030 Hb_000548_030 Hb_000548_030 Hb_003304_050--Hb_000548_030 Hb_003304_050--Hb_003654_010 Hb_003304_050--Hb_002027_220 Hb_002111_060 Hb_002111_060 Hb_000086_200--Hb_002111_060 Hb_000197_210 Hb_000197_210 Hb_000086_200--Hb_000197_210 Hb_176152_010 Hb_176152_010 Hb_000086_200--Hb_176152_010 Hb_000025_090 Hb_000025_090 Hb_000086_200--Hb_000025_090 Hb_000236_380 Hb_000236_380 Hb_000086_200--Hb_000236_380 Hb_000123_090 Hb_000123_090 Hb_000086_200--Hb_000123_090 Hb_003216_110 Hb_003216_110 Hb_001268_210--Hb_003216_110 Hb_004143_070 Hb_004143_070 Hb_001268_210--Hb_004143_070 Hb_001268_210--Hb_000165_130 Hb_001268_210--Hb_000197_210 Hb_002475_050 Hb_002475_050 Hb_001268_210--Hb_002475_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.2022 5.05611 1.6682 16.1754 16.3258 19.3057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3455 4.91378 2.38863 0.846656 2.84118

CAGE analysis