Hb_026527_050

Information

Type -
Description -
Location Contig26527: 26626-29856
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10670g
description POPTRDRAFT_731548; ribosomal protein L29
nr
ID XP_011040021.1
description PREDICTED: 39S ribosomal protein L47, mitochondrial-like isoform X1 [Populus euphratica]
swissprot
ID Q8K2Y7
description 39S ribosomal protein L47, mitochondrial OS=Mus musculus GN=Mrpl47 PE=2 SV=2
trembl
ID A9PBH0
description Ribosomal protein L29 OS=Populus trichocarpa GN=POPTR_0014s10670g PE=2 SV=1
Gene Ontology
ID GO:0005761
description 39s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27737: 26719-29827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026527_050 0.0 - - PREDICTED: 39S ribosomal protein L47, mitochondrial-like isoform X1 [Populus euphratica]
2 Hb_004102_110 0.0707956582 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
3 Hb_006198_070 0.0778619814 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
4 Hb_003052_190 0.0849785474 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
5 Hb_000667_070 0.0872279753 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
6 Hb_003540_240 0.0876934672 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
7 Hb_005496_140 0.0885184692 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001931_010 0.091351356 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
9 Hb_024439_010 0.0913550775 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
10 Hb_000614_160 0.0946244913 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
11 Hb_000527_060 0.0947959504 - - Protein C20orf11, putative [Ricinus communis]
12 Hb_004889_020 0.0955093416 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
13 Hb_004143_150 0.0965120837 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
14 Hb_007676_080 0.0971654138 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
15 Hb_003064_020 0.098365663 - - hypothetical protein JCGZ_21649 [Jatropha curcas]
16 Hb_002171_060 0.0984910553 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000003_230 0.0989109752 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
18 Hb_000390_300 0.0997549394 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
19 Hb_003582_060 0.0999150338 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
20 Hb_001123_130 0.1006567378 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_026527_050 Hb_026527_050 Hb_004102_110 Hb_004102_110 Hb_026527_050--Hb_004102_110 Hb_006198_070 Hb_006198_070 Hb_026527_050--Hb_006198_070 Hb_003052_190 Hb_003052_190 Hb_026527_050--Hb_003052_190 Hb_000667_070 Hb_000667_070 Hb_026527_050--Hb_000667_070 Hb_003540_240 Hb_003540_240 Hb_026527_050--Hb_003540_240 Hb_005496_140 Hb_005496_140 Hb_026527_050--Hb_005496_140 Hb_024439_010 Hb_024439_010 Hb_004102_110--Hb_024439_010 Hb_000016_160 Hb_000016_160 Hb_004102_110--Hb_000016_160 Hb_004143_150 Hb_004143_150 Hb_004102_110--Hb_004143_150 Hb_009615_070 Hb_009615_070 Hb_004102_110--Hb_009615_070 Hb_000527_060 Hb_000527_060 Hb_004102_110--Hb_000527_060 Hb_005843_140 Hb_005843_140 Hb_006198_070--Hb_005843_140 Hb_003669_020 Hb_003669_020 Hb_006198_070--Hb_003669_020 Hb_006198_070--Hb_003540_240 Hb_006355_040 Hb_006355_040 Hb_006198_070--Hb_006355_040 Hb_004057_010 Hb_004057_010 Hb_006198_070--Hb_004057_010 Hb_003582_060 Hb_003582_060 Hb_003052_190--Hb_003582_060 Hb_003304_020 Hb_003304_020 Hb_003052_190--Hb_003304_020 Hb_001245_100 Hb_001245_100 Hb_003052_190--Hb_001245_100 Hb_001163_050 Hb_001163_050 Hb_003052_190--Hb_001163_050 Hb_000205_090 Hb_000205_090 Hb_003052_190--Hb_000205_090 Hb_000003_230 Hb_000003_230 Hb_003052_190--Hb_000003_230 Hb_000667_070--Hb_001245_100 Hb_001123_130 Hb_001123_130 Hb_000667_070--Hb_001123_130 Hb_000656_240 Hb_000656_240 Hb_000667_070--Hb_000656_240 Hb_015279_010 Hb_015279_010 Hb_000667_070--Hb_015279_010 Hb_001133_120 Hb_001133_120 Hb_000667_070--Hb_001133_120 Hb_008554_060 Hb_008554_060 Hb_000667_070--Hb_008554_060 Hb_002056_050 Hb_002056_050 Hb_003540_240--Hb_002056_050 Hb_000441_110 Hb_000441_110 Hb_003540_240--Hb_000441_110 Hb_002235_350 Hb_002235_350 Hb_003540_240--Hb_002235_350 Hb_004127_020 Hb_004127_020 Hb_003540_240--Hb_004127_020 Hb_000169_040 Hb_000169_040 Hb_003540_240--Hb_000169_040 Hb_002798_020 Hb_002798_020 Hb_003540_240--Hb_002798_020 Hb_002863_050 Hb_002863_050 Hb_005496_140--Hb_002863_050 Hb_002235_250 Hb_002235_250 Hb_005496_140--Hb_002235_250 Hb_000375_350 Hb_000375_350 Hb_005496_140--Hb_000375_350 Hb_001252_130 Hb_001252_130 Hb_005496_140--Hb_001252_130 Hb_017895_040 Hb_017895_040 Hb_005496_140--Hb_017895_040 Hb_003416_010 Hb_003416_010 Hb_005496_140--Hb_003416_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7955 11.0955 18.4375 16.8023 11.4086 15.5823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5583 42.4904 20.2099 11.6123 15.7196

CAGE analysis