Hb_026620_010

Information

Type -
Description -
Location Contig26620: 1-750
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026620_010 0.0 - - -
2 Hb_119600_020 0.1185964501 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
3 Hb_002053_070 0.1660033267 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 14 [Populus euphratica]
4 Hb_000976_090 0.1709085805 - - -
5 Hb_014214_010 0.1758259491 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
6 Hb_076233_010 0.1815348137 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001808_010 0.1821089132 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
8 Hb_007075_020 0.1952477803 transcription factor TF Family: TRAF ankyrin repeat family protein [Populus trichocarpa]
9 Hb_000115_260 0.1977045033 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
10 Hb_005511_070 0.1977201742 - - -
11 Hb_005306_200 0.1978304299 - - -
12 Hb_000903_050 0.1979464484 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
13 Hb_000259_100 0.1987504827 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
14 Hb_000174_020 0.1994681142 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
15 Hb_031022_040 0.2007512845 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
16 Hb_000501_090 0.2015145206 - - -
17 Hb_000433_060 0.2015160021 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
18 Hb_000008_040 0.203608866 - - hypothetical protein POPTR_0009s01550g [Populus trichocarpa]
19 Hb_007545_200 0.2039172685 - - Pectinesterase-3 precursor, putative [Ricinus communis]
20 Hb_161954_010 0.2043497935 - - hypothetical protein JCGZ_05404 [Jatropha curcas]

Gene co-expression network

sample Hb_026620_010 Hb_026620_010 Hb_119600_020 Hb_119600_020 Hb_026620_010--Hb_119600_020 Hb_002053_070 Hb_002053_070 Hb_026620_010--Hb_002053_070 Hb_000976_090 Hb_000976_090 Hb_026620_010--Hb_000976_090 Hb_014214_010 Hb_014214_010 Hb_026620_010--Hb_014214_010 Hb_076233_010 Hb_076233_010 Hb_026620_010--Hb_076233_010 Hb_001808_010 Hb_001808_010 Hb_026620_010--Hb_001808_010 Hb_007545_200 Hb_007545_200 Hb_119600_020--Hb_007545_200 Hb_020805_160 Hb_020805_160 Hb_119600_020--Hb_020805_160 Hb_000172_150 Hb_000172_150 Hb_119600_020--Hb_000172_150 Hb_052802_010 Hb_052802_010 Hb_119600_020--Hb_052802_010 Hb_000270_530 Hb_000270_530 Hb_119600_020--Hb_000270_530 Hb_002053_070--Hb_000976_090 Hb_002053_070--Hb_014214_010 Hb_009466_040 Hb_009466_040 Hb_002053_070--Hb_009466_040 Hb_000056_180 Hb_000056_180 Hb_002053_070--Hb_000056_180 Hb_000061_080 Hb_000061_080 Hb_002053_070--Hb_000061_080 Hb_031022_040 Hb_031022_040 Hb_002053_070--Hb_031022_040 Hb_000976_090--Hb_014214_010 Hb_000976_090--Hb_009466_040 Hb_000976_090--Hb_000056_180 Hb_000976_090--Hb_000061_080 Hb_003059_060 Hb_003059_060 Hb_000976_090--Hb_003059_060 Hb_014214_010--Hb_001808_010 Hb_000433_060 Hb_000433_060 Hb_014214_010--Hb_000433_060 Hb_000903_050 Hb_000903_050 Hb_014214_010--Hb_000903_050 Hb_005306_200 Hb_005306_200 Hb_014214_010--Hb_005306_200 Hb_000646_020 Hb_000646_020 Hb_076233_010--Hb_000646_020 Hb_000184_140 Hb_000184_140 Hb_076233_010--Hb_000184_140 Hb_076233_010--Hb_119600_020 Hb_076233_010--Hb_020805_160 Hb_076233_010--Hb_007545_200 Hb_001808_010--Hb_000433_060 Hb_000373_110 Hb_000373_110 Hb_001808_010--Hb_000373_110 Hb_002422_010 Hb_002422_010 Hb_001808_010--Hb_002422_010 Hb_003012_010 Hb_003012_010 Hb_001808_010--Hb_003012_010 Hb_005054_010 Hb_005054_010 Hb_001808_010--Hb_005054_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03356 6.8734 0 13.2685 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.623247 0

CAGE analysis