Hb_026698_010

Information

Type -
Description -
Location Contig26698: 13198-16193
Sequence    

Annotation

kegg
ID rcu:RCOM_1636080
description 2,4-dienoyl-CoA reductase, putative (EC:1.1.1.100)
nr
ID XP_002517315.1
description 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q9X248
description 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=fabG PE=3 SV=1
trembl
ID B9RU96
description 2,4-dienoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_1636080 PE=3 SV=1
Gene Ontology
ID GO:0004316
description 3-oxoacyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026698_010 0.0 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
2 Hb_010407_070 0.0878833662 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
3 Hb_004225_180 0.107380621 - - bel1 homeotic protein, putative [Ricinus communis]
4 Hb_000599_140 0.1446575406 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Populus euphratica]
5 Hb_017987_070 0.1451448712 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
6 Hb_000457_170 0.1457564313 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
7 Hb_004607_150 0.1584729486 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
8 Hb_000261_490 0.1609703262 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
9 Hb_000050_100 0.1623050796 - - PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
10 Hb_000116_230 0.1695117905 - - -
11 Hb_001318_030 0.1699229959 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
12 Hb_006189_010 0.1709385725 - - -
13 Hb_180333_010 0.1722500348 - - -
14 Hb_017987_090 0.172321207 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
15 Hb_008959_030 0.1741921215 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
16 Hb_000703_240 0.1746084753 - - -
17 Hb_000237_080 0.1768260791 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
18 Hb_007849_040 0.1769477705 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
19 Hb_005306_130 0.1791404642 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_003978_010 0.1792854056 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_026698_010 Hb_026698_010 Hb_010407_070 Hb_010407_070 Hb_026698_010--Hb_010407_070 Hb_004225_180 Hb_004225_180 Hb_026698_010--Hb_004225_180 Hb_000599_140 Hb_000599_140 Hb_026698_010--Hb_000599_140 Hb_017987_070 Hb_017987_070 Hb_026698_010--Hb_017987_070 Hb_000457_170 Hb_000457_170 Hb_026698_010--Hb_000457_170 Hb_004607_150 Hb_004607_150 Hb_026698_010--Hb_004607_150 Hb_010407_070--Hb_004225_180 Hb_000050_100 Hb_000050_100 Hb_010407_070--Hb_000050_100 Hb_000116_230 Hb_000116_230 Hb_010407_070--Hb_000116_230 Hb_010407_070--Hb_000599_140 Hb_007849_040 Hb_007849_040 Hb_010407_070--Hb_007849_040 Hb_006189_010 Hb_006189_010 Hb_004225_180--Hb_006189_010 Hb_011472_040 Hb_011472_040 Hb_004225_180--Hb_011472_040 Hb_004225_180--Hb_007849_040 Hb_003978_010 Hb_003978_010 Hb_004225_180--Hb_003978_010 Hb_000599_140--Hb_000116_230 Hb_002798_060 Hb_002798_060 Hb_000599_140--Hb_002798_060 Hb_008959_030 Hb_008959_030 Hb_000599_140--Hb_008959_030 Hb_005306_130 Hb_005306_130 Hb_000599_140--Hb_005306_130 Hb_000340_010 Hb_000340_010 Hb_017987_070--Hb_000340_010 Hb_001274_020 Hb_001274_020 Hb_017987_070--Hb_001274_020 Hb_000261_490 Hb_000261_490 Hb_017987_070--Hb_000261_490 Hb_169325_010 Hb_169325_010 Hb_017987_070--Hb_169325_010 Hb_002783_230 Hb_002783_230 Hb_017987_070--Hb_002783_230 Hb_000457_170--Hb_000261_490 Hb_005843_100 Hb_005843_100 Hb_000457_170--Hb_005843_100 Hb_005396_050 Hb_005396_050 Hb_000457_170--Hb_005396_050 Hb_146464_010 Hb_146464_010 Hb_000457_170--Hb_146464_010 Hb_000497_180 Hb_000497_180 Hb_000457_170--Hb_000497_180 Hb_180333_010 Hb_180333_010 Hb_004607_150--Hb_180333_010 Hb_004607_150--Hb_006189_010 Hb_004607_150--Hb_002798_060 Hb_000116_470 Hb_000116_470 Hb_004607_150--Hb_000116_470 Hb_004012_010 Hb_004012_010 Hb_004607_150--Hb_004012_010 Hb_004920_040 Hb_004920_040 Hb_004607_150--Hb_004920_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1233 21.0544 0.0986722 0.603926 8.2161 15.4869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0759 12.7261 13.0346 7.30613 0.109518

CAGE analysis