Hb_026698_020

Information

Type -
Description -
Location Contig26698: 22925-28308
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09820g
description POPTRDRAFT_780498; hypothetical protein
nr
ID XP_012076887.1
description PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID B9IQ77
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09820g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27826: 22855-29504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026698_020 0.0 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
2 Hb_001514_240 0.0724306651 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
3 Hb_000417_410 0.1006096027 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
4 Hb_009449_100 0.1006819315 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
5 Hb_002888_040 0.1034624547 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
6 Hb_001195_230 0.1040419607 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
7 Hb_132840_030 0.1062595775 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
8 Hb_005588_120 0.1139594243 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000340_220 0.1211876027 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000329_790 0.1215874769 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
11 Hb_001124_140 0.124219295 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
12 Hb_000365_220 0.1247778331 - - protein phosphatase-1, putative [Ricinus communis]
13 Hb_004574_040 0.1253123045 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
14 Hb_001123_190 0.1274681479 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
15 Hb_073973_020 0.1292160981 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
16 Hb_001179_010 0.129828814 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
17 Hb_012366_050 0.1300029379 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
18 Hb_002259_220 0.1305730029 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
19 Hb_001499_070 0.130856726 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
20 Hb_000024_130 0.1311377044 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_026698_020 Hb_026698_020 Hb_001514_240 Hb_001514_240 Hb_026698_020--Hb_001514_240 Hb_000417_410 Hb_000417_410 Hb_026698_020--Hb_000417_410 Hb_009449_100 Hb_009449_100 Hb_026698_020--Hb_009449_100 Hb_002888_040 Hb_002888_040 Hb_026698_020--Hb_002888_040 Hb_001195_230 Hb_001195_230 Hb_026698_020--Hb_001195_230 Hb_132840_030 Hb_132840_030 Hb_026698_020--Hb_132840_030 Hb_002259_220 Hb_002259_220 Hb_001514_240--Hb_002259_220 Hb_001514_240--Hb_009449_100 Hb_001499_070 Hb_001499_070 Hb_001514_240--Hb_001499_070 Hb_013968_010 Hb_013968_010 Hb_001514_240--Hb_013968_010 Hb_187005_010 Hb_187005_010 Hb_001514_240--Hb_187005_010 Hb_000365_220 Hb_000365_220 Hb_000417_410--Hb_000365_220 Hb_073973_020 Hb_073973_020 Hb_000417_410--Hb_073973_020 Hb_000417_410--Hb_002888_040 Hb_001307_200 Hb_001307_200 Hb_000417_410--Hb_001307_200 Hb_000522_010 Hb_000522_010 Hb_000417_410--Hb_000522_010 Hb_054865_050 Hb_054865_050 Hb_009449_100--Hb_054865_050 Hb_005064_070 Hb_005064_070 Hb_009449_100--Hb_005064_070 Hb_009449_100--Hb_002259_220 Hb_000329_790 Hb_000329_790 Hb_009449_100--Hb_000329_790 Hb_002888_040--Hb_000365_220 Hb_001689_030 Hb_001689_030 Hb_002888_040--Hb_001689_030 Hb_003517_100 Hb_003517_100 Hb_002888_040--Hb_003517_100 Hb_002888_040--Hb_001195_230 Hb_001268_300 Hb_001268_300 Hb_002888_040--Hb_001268_300 Hb_000096_110 Hb_000096_110 Hb_001195_230--Hb_000096_110 Hb_000007_440 Hb_000007_440 Hb_001195_230--Hb_000007_440 Hb_000320_450 Hb_000320_450 Hb_001195_230--Hb_000320_450 Hb_001195_230--Hb_001689_030 Hb_005588_120 Hb_005588_120 Hb_132840_030--Hb_005588_120 Hb_006949_060 Hb_006949_060 Hb_132840_030--Hb_006949_060 Hb_132840_030--Hb_001514_240 Hb_000227_320 Hb_000227_320 Hb_132840_030--Hb_000227_320 Hb_001404_090 Hb_001404_090 Hb_132840_030--Hb_001404_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.197669 2.77031 2.3709 1.88669 0.104052 0.205981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.173888 0.209293 0.417701 1.65753 2.46855

CAGE analysis