Hb_026745_020

Information

Type -
Description -
Location Contig26745: 5815-19456
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05490g
description hypothetical protein
nr
ID XP_012079278.1
description PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
swissprot
ID F4I933
description Rhodanese-like domain-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=STR8 PE=2 SV=1
trembl
ID U5FPE7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s05490g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026745_020 0.0 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
2 Hb_005701_060 0.1019993345 - - hypothetical protein JCGZ_04513 [Jatropha curcas]
3 Hb_004060_030 0.1078915581 - - PREDICTED: primase homolog protein [Jatropha curcas]
4 Hb_004303_040 0.1098974507 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
5 Hb_000193_270 0.1133323266 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
6 Hb_162603_010 0.1182771573 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_025194_100 0.1207154244 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
8 Hb_001168_020 0.12103155 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
9 Hb_028420_020 0.121669423 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
10 Hb_000429_150 0.1223075224 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
11 Hb_002289_080 0.1270524692 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
12 Hb_020665_040 0.1297758908 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]
13 Hb_005078_010 0.1298723053 - - Derlin-2, putative [Ricinus communis]
14 Hb_008447_040 0.1312147591 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
15 Hb_054745_010 0.1343441288 - - conserved hypothetical protein [Ricinus communis]
16 Hb_022833_100 0.1345680447 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
17 Hb_008447_030 0.1359586646 - - -
18 Hb_000696_330 0.138347696 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
19 Hb_000310_090 0.1401786005 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
20 Hb_002414_060 0.1418573311 - - hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]

Gene co-expression network

sample Hb_026745_020 Hb_026745_020 Hb_005701_060 Hb_005701_060 Hb_026745_020--Hb_005701_060 Hb_004060_030 Hb_004060_030 Hb_026745_020--Hb_004060_030 Hb_004303_040 Hb_004303_040 Hb_026745_020--Hb_004303_040 Hb_000193_270 Hb_000193_270 Hb_026745_020--Hb_000193_270 Hb_162603_010 Hb_162603_010 Hb_026745_020--Hb_162603_010 Hb_025194_100 Hb_025194_100 Hb_026745_020--Hb_025194_100 Hb_005701_060--Hb_162603_010 Hb_001014_110 Hb_001014_110 Hb_005701_060--Hb_001014_110 Hb_005701_060--Hb_025194_100 Hb_000429_150 Hb_000429_150 Hb_005701_060--Hb_000429_150 Hb_005701_060--Hb_004303_040 Hb_005085_030 Hb_005085_030 Hb_004060_030--Hb_005085_030 Hb_028420_020 Hb_028420_020 Hb_004060_030--Hb_028420_020 Hb_002174_050 Hb_002174_050 Hb_004060_030--Hb_002174_050 Hb_005862_010 Hb_005862_010 Hb_004060_030--Hb_005862_010 Hb_000329_560 Hb_000329_560 Hb_004060_030--Hb_000329_560 Hb_002481_060 Hb_002481_060 Hb_004303_040--Hb_002481_060 Hb_004709_020 Hb_004709_020 Hb_004303_040--Hb_004709_020 Hb_002200_040 Hb_002200_040 Hb_004303_040--Hb_002200_040 Hb_000004_020 Hb_000004_020 Hb_004303_040--Hb_000004_020 Hb_000599_300 Hb_000599_300 Hb_000193_270--Hb_000599_300 Hb_153533_010 Hb_153533_010 Hb_000193_270--Hb_153533_010 Hb_005078_010 Hb_005078_010 Hb_000193_270--Hb_005078_010 Hb_009117_030 Hb_009117_030 Hb_000193_270--Hb_009117_030 Hb_003633_030 Hb_003633_030 Hb_000193_270--Hb_003633_030 Hb_011021_020 Hb_011021_020 Hb_000193_270--Hb_011021_020 Hb_007026_040 Hb_007026_040 Hb_162603_010--Hb_007026_040 Hb_162603_010--Hb_000429_150 Hb_099878_030 Hb_099878_030 Hb_162603_010--Hb_099878_030 Hb_000236_310 Hb_000236_310 Hb_162603_010--Hb_000236_310 Hb_000830_030 Hb_000830_030 Hb_162603_010--Hb_000830_030 Hb_000140_280 Hb_000140_280 Hb_162603_010--Hb_000140_280 Hb_002289_080 Hb_002289_080 Hb_025194_100--Hb_002289_080 Hb_152371_010 Hb_152371_010 Hb_025194_100--Hb_152371_010 Hb_025194_100--Hb_000599_300 Hb_000310_090 Hb_000310_090 Hb_025194_100--Hb_000310_090 Hb_002994_030 Hb_002994_030 Hb_025194_100--Hb_002994_030 Hb_000696_330 Hb_000696_330 Hb_025194_100--Hb_000696_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.8595 2.40721 3.0887 7.45744 3.02074 14.0827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.42194 7.16233 4.016 5.66865 8.29292

CAGE analysis