Hb_026747_020

Information

Type -
Description -
Location Contig26747: 25995-26687
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026747_020 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_003994_170 0.1550763049 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
3 Hb_001232_120 0.2367264064 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
4 Hb_009393_170 0.2683449867 - - PREDICTED: vestitone reductase-like [Jatropha curcas]
5 Hb_002043_110 0.3063137183 - - hypothetical protein POPTR_0001s19500g [Populus trichocarpa]
6 Hb_000454_060 0.3073215774 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
7 Hb_000048_020 0.316336691 - - -
8 Hb_000693_020 0.3254363678 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
9 Hb_004525_060 0.3256906905 - - -
10 Hb_002234_190 0.3263204098 - - PREDICTED: putative non-specific lipid-transfer protein 14 [Jatropha curcas]
11 Hb_010288_040 0.3277680288 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
12 Hb_006816_400 0.333844793 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
13 Hb_000317_400 0.3348444633 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
14 Hb_004116_130 0.3351551441 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
15 Hb_108884_010 0.3355670654 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Prunus mume]
16 Hb_155092_010 0.3362624004 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
17 Hb_002828_040 0.3459624803 - - transmembrane protein, putative [Medicago truncatula]
18 Hb_012807_010 0.3469473024 - - -
19 Hb_006502_050 0.3520840377 - - -
20 Hb_133702_040 0.3524542355 - - -

Gene co-expression network

sample Hb_026747_020 Hb_026747_020 Hb_003994_170 Hb_003994_170 Hb_026747_020--Hb_003994_170 Hb_001232_120 Hb_001232_120 Hb_026747_020--Hb_001232_120 Hb_009393_170 Hb_009393_170 Hb_026747_020--Hb_009393_170 Hb_002043_110 Hb_002043_110 Hb_026747_020--Hb_002043_110 Hb_000454_060 Hb_000454_060 Hb_026747_020--Hb_000454_060 Hb_000048_020 Hb_000048_020 Hb_026747_020--Hb_000048_020 Hb_003994_170--Hb_009393_170 Hb_003994_170--Hb_000454_060 Hb_003994_170--Hb_001232_120 Hb_004116_130 Hb_004116_130 Hb_003994_170--Hb_004116_130 Hb_000317_400 Hb_000317_400 Hb_003994_170--Hb_000317_400 Hb_001232_120--Hb_000048_020 Hb_004525_060 Hb_004525_060 Hb_001232_120--Hb_004525_060 Hb_012807_010 Hb_012807_010 Hb_001232_120--Hb_012807_010 Hb_000107_640 Hb_000107_640 Hb_001232_120--Hb_000107_640 Hb_000087_050 Hb_000087_050 Hb_009393_170--Hb_000087_050 Hb_001183_010 Hb_001183_010 Hb_009393_170--Hb_001183_010 Hb_011861_120 Hb_011861_120 Hb_009393_170--Hb_011861_120 Hb_002234_190 Hb_002234_190 Hb_009393_170--Hb_002234_190 Hb_002876_290 Hb_002876_290 Hb_009393_170--Hb_002876_290 Hb_112023_010 Hb_112023_010 Hb_009393_170--Hb_112023_010 Hb_000504_110 Hb_000504_110 Hb_002043_110--Hb_000504_110 Hb_001828_030 Hb_001828_030 Hb_002043_110--Hb_001828_030 Hb_007317_080 Hb_007317_080 Hb_002043_110--Hb_007317_080 Hb_001022_040 Hb_001022_040 Hb_002043_110--Hb_001022_040 Hb_021888_120 Hb_021888_120 Hb_002043_110--Hb_021888_120 Hb_000454_060--Hb_004525_060 Hb_132998_020 Hb_132998_020 Hb_000454_060--Hb_132998_020 Hb_021888_050 Hb_021888_050 Hb_000454_060--Hb_021888_050 Hb_001504_120 Hb_001504_120 Hb_000454_060--Hb_001504_120 Hb_009780_080 Hb_009780_080 Hb_000454_060--Hb_009780_080 Hb_000454_060--Hb_000317_400 Hb_000048_020--Hb_004525_060 Hb_008289_050 Hb_008289_050 Hb_000048_020--Hb_008289_050 Hb_021943_030 Hb_021943_030 Hb_000048_020--Hb_021943_030 Hb_010288_040 Hb_010288_040 Hb_000048_020--Hb_010288_040 Hb_027472_230 Hb_027472_230 Hb_000048_020--Hb_027472_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0897794 0 0.0636286 0 0.109901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.246141 0.128998 0 0.157528 0

CAGE analysis