Hb_027028_010

Information

Type -
Description -
Location Contig27028: 2631-22532
Sequence    

Annotation

kegg
ID lgi:LOTGIDRAFT_131754
description hypothetical protein
nr
ID KDP39384.1
description hypothetical protein JCGZ_01141 [Jatropha curcas]
swissprot
ID Q7XSK0
description Beta-glucosidase 18 OS=Oryza sativa subsp. japonica GN=BGLU18 PE=3 SV=2
trembl
ID A0A0E0H347
description Uncharacterized protein OS=Oryza nivara PE=4 SV=1
Gene Ontology
ID GO:0004553
description beta-glucosidase 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28362: 9608-10545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027028_010 0.0 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
2 Hb_003119_120 0.0296237306 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
3 Hb_003549_010 0.1129977554 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
4 Hb_000679_280 0.1228805758 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
5 Hb_002805_260 0.1299407363 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000552_030 0.135766677 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
7 Hb_173764_010 0.1366561269 - - protein binding protein, putative [Ricinus communis]
8 Hb_028013_030 0.1420434722 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_002498_290 0.1451119016 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
10 Hb_000057_210 0.1596302394 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
11 Hb_000431_140 0.1633415074 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
12 Hb_010053_010 0.1653114208 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
13 Hb_001890_040 0.1662855975 - - receptor-kinase, putative [Ricinus communis]
14 Hb_030736_030 0.1693750778 - - hypothetical protein VITISV_006651 [Vitis vinifera]
15 Hb_002081_220 0.170869806 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
16 Hb_000128_050 0.1809258066 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002081_190 0.1975392294 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
18 Hb_024948_010 0.2032847352 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
19 Hb_036182_010 0.2062264177 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
20 Hb_003480_010 0.2096168478 - - cytochrome P450 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_027028_010 Hb_027028_010 Hb_003119_120 Hb_003119_120 Hb_027028_010--Hb_003119_120 Hb_003549_010 Hb_003549_010 Hb_027028_010--Hb_003549_010 Hb_000679_280 Hb_000679_280 Hb_027028_010--Hb_000679_280 Hb_002805_260 Hb_002805_260 Hb_027028_010--Hb_002805_260 Hb_000552_030 Hb_000552_030 Hb_027028_010--Hb_000552_030 Hb_173764_010 Hb_173764_010 Hb_027028_010--Hb_173764_010 Hb_003119_120--Hb_003549_010 Hb_003119_120--Hb_000679_280 Hb_000057_210 Hb_000057_210 Hb_003119_120--Hb_000057_210 Hb_003119_120--Hb_000552_030 Hb_003119_120--Hb_173764_010 Hb_003549_010--Hb_000679_280 Hb_002498_290 Hb_002498_290 Hb_003549_010--Hb_002498_290 Hb_030736_030 Hb_030736_030 Hb_003549_010--Hb_030736_030 Hb_003549_010--Hb_173764_010 Hb_000679_280--Hb_002498_290 Hb_000679_280--Hb_030736_030 Hb_000679_280--Hb_173764_010 Hb_151094_020 Hb_151094_020 Hb_000679_280--Hb_151094_020 Hb_007654_010 Hb_007654_010 Hb_002805_260--Hb_007654_010 Hb_028013_030 Hb_028013_030 Hb_002805_260--Hb_028013_030 Hb_002805_260--Hb_003119_120 Hb_002805_260--Hb_173764_010 Hb_001890_040 Hb_001890_040 Hb_002805_260--Hb_001890_040 Hb_000552_030--Hb_173764_010 Hb_000128_050 Hb_000128_050 Hb_000552_030--Hb_000128_050 Hb_010053_010 Hb_010053_010 Hb_000552_030--Hb_010053_010 Hb_002081_190 Hb_002081_190 Hb_000552_030--Hb_002081_190 Hb_000552_030--Hb_003549_010 Hb_173764_010--Hb_000128_050 Hb_173764_010--Hb_002081_190 Hb_173764_010--Hb_002498_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0579589 0.0102072 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0386448 0

CAGE analysis