Hb_027028_020

Information

Type -
Description -
Location Contig27028: 24152-29322
Sequence    

Annotation

kegg
ID rcu:RCOM_1020320
description PMP, putative
nr
ID XP_012071163.1
description PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01140 PE=4 SV=1
Gene Ontology
ID GO:0012505
description putative type 1 membrane family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28363: 24037-29368
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027028_020 0.0 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
2 Hb_008714_020 0.0688232962 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
3 Hb_000866_030 0.0795807785 - - hypothetical protein RCOM_1615820 [Ricinus communis]
4 Hb_000915_050 0.0815106843 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003362_040 0.0817910293 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
6 Hb_001019_170 0.0823569129 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
7 Hb_001040_160 0.0833114667 - - glutaredoxin, grx, putative [Ricinus communis]
8 Hb_010180_040 0.0848513654 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
9 Hb_000370_030 0.0870411763 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
10 Hb_000789_080 0.0886653647 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
11 Hb_003581_120 0.0925113435 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
12 Hb_000034_050 0.0931056321 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
13 Hb_002200_130 0.0934115235 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
14 Hb_004450_010 0.0942534441 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
15 Hb_000457_060 0.0949970107 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
16 Hb_008695_120 0.0958634314 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
17 Hb_000645_120 0.095939192 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
18 Hb_000184_130 0.09627169 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
19 Hb_002196_020 0.096904656 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000322_100 0.0977601102 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]

Gene co-expression network

sample Hb_027028_020 Hb_027028_020 Hb_008714_020 Hb_008714_020 Hb_027028_020--Hb_008714_020 Hb_000866_030 Hb_000866_030 Hb_027028_020--Hb_000866_030 Hb_000915_050 Hb_000915_050 Hb_027028_020--Hb_000915_050 Hb_003362_040 Hb_003362_040 Hb_027028_020--Hb_003362_040 Hb_001019_170 Hb_001019_170 Hb_027028_020--Hb_001019_170 Hb_001040_160 Hb_001040_160 Hb_027028_020--Hb_001040_160 Hb_008714_020--Hb_001019_170 Hb_010180_040 Hb_010180_040 Hb_008714_020--Hb_010180_040 Hb_008714_020--Hb_001040_160 Hb_000699_250 Hb_000699_250 Hb_008714_020--Hb_000699_250 Hb_000046_450 Hb_000046_450 Hb_008714_020--Hb_000046_450 Hb_187739_020 Hb_187739_020 Hb_000866_030--Hb_187739_020 Hb_006913_040 Hb_006913_040 Hb_000866_030--Hb_006913_040 Hb_000866_030--Hb_008714_020 Hb_002982_040 Hb_002982_040 Hb_000866_030--Hb_002982_040 Hb_002942_160 Hb_002942_160 Hb_000866_030--Hb_002942_160 Hb_000915_050--Hb_003362_040 Hb_000244_250 Hb_000244_250 Hb_000915_050--Hb_000244_250 Hb_000184_130 Hb_000184_130 Hb_000915_050--Hb_000184_130 Hb_004055_040 Hb_004055_040 Hb_000915_050--Hb_004055_040 Hb_000283_070 Hb_000283_070 Hb_000915_050--Hb_000283_070 Hb_004204_020 Hb_004204_020 Hb_000915_050--Hb_004204_020 Hb_002200_130 Hb_002200_130 Hb_003362_040--Hb_002200_130 Hb_003362_040--Hb_000244_250 Hb_007188_070 Hb_007188_070 Hb_003362_040--Hb_007188_070 Hb_009627_010 Hb_009627_010 Hb_003362_040--Hb_009627_010 Hb_000034_050 Hb_000034_050 Hb_003362_040--Hb_000034_050 Hb_008695_120 Hb_008695_120 Hb_001019_170--Hb_008695_120 Hb_003581_120 Hb_003581_120 Hb_001019_170--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_001019_170--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_001019_170--Hb_000076_080 Hb_001019_170--Hb_006913_040 Hb_000316_030 Hb_000316_030 Hb_001040_160--Hb_000316_030 Hb_001609_010 Hb_001609_010 Hb_001040_160--Hb_001609_010 Hb_063047_010 Hb_063047_010 Hb_001040_160--Hb_063047_010 Hb_005635_010 Hb_005635_010 Hb_001040_160--Hb_005635_010 Hb_025012_010 Hb_025012_010 Hb_001040_160--Hb_025012_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
241.199 120.12 41.3723 124.049 203.57 283.196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
144.321 72.0364 118.509 106.83 39.1885

CAGE analysis