Hb_027028_030

Information

Type -
Description -
Location Contig27028: 35669-36007
Sequence    

Annotation

kegg
ID rcu:RCOM_1020210
description hypothetical protein
nr
ID XP_002518114.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A1EC31
description CLAVATA3/ESR (CLE)-related protein TDIF OS=Zinnia violacea GN=TDIF PE=1 SV=1
trembl
ID B9RWJ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1020210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28364: 35600-36263
cDNA
(Sanger)
(ID:Location)		 018_F10.ab1: 35600-36263 , 044_D03.ab1: 35600-36263

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027028_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000579_020 0.2163900323 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
3 Hb_012366_040 0.2410167592 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Gossypium raimondii]
4 Hb_001001_030 0.2535169992 - - hypothetical protein POPTR_0014s03230g [Populus trichocarpa]
5 Hb_001102_230 0.2664066568 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
6 Hb_001252_180 0.2733151447 desease resistance Gene Name: DUF3542 conserved hypothetical protein [Ricinus communis]
7 Hb_000573_020 0.278759106 transcription factor TF Family: Orphans receptor histidine kinase, putative [Ricinus communis]
8 Hb_005211_160 0.284147157 - - Protein PNS1, putative [Ricinus communis]
9 Hb_001606_080 0.285128198 - - PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X2 [Jatropha curcas]
10 Hb_150651_050 0.2907238616 - - phosphoglycerate mutase, putative [Ricinus communis]
11 Hb_000098_020 0.2911394707 transcription factor TF Family: GRAS GRAS family transcription factor family protein [Theobroma cacao]
12 Hb_004871_070 0.2933354325 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
13 Hb_000326_030 0.2944655159 - - hypothetical protein PRUPE_ppa013909mg [Prunus persica]
14 Hb_000043_070 0.2956754606 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
15 Hb_001749_010 0.2968258301 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
16 Hb_000329_050 0.2975832903 - - -
17 Hb_090855_010 0.2976877952 - - Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_002740_130 0.2977155842 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
19 Hb_006816_130 0.2985859752 - - PREDICTED: uncharacterized protein LOC105647421 [Jatropha curcas]
20 Hb_005976_050 0.298587373 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]

Gene co-expression network

sample Hb_027028_030 Hb_027028_030 Hb_000579_020 Hb_000579_020 Hb_027028_030--Hb_000579_020 Hb_012366_040 Hb_012366_040 Hb_027028_030--Hb_012366_040 Hb_001001_030 Hb_001001_030 Hb_027028_030--Hb_001001_030 Hb_001102_230 Hb_001102_230 Hb_027028_030--Hb_001102_230 Hb_001252_180 Hb_001252_180 Hb_027028_030--Hb_001252_180 Hb_000573_020 Hb_000573_020 Hb_027028_030--Hb_000573_020 Hb_004871_070 Hb_004871_070 Hb_000579_020--Hb_004871_070 Hb_000457_210 Hb_000457_210 Hb_000579_020--Hb_000457_210 Hb_003464_030 Hb_003464_030 Hb_000579_020--Hb_003464_030 Hb_000043_070 Hb_000043_070 Hb_000579_020--Hb_000043_070 Hb_007747_140 Hb_007747_140 Hb_000579_020--Hb_007747_140 Hb_012366_040--Hb_001001_030 Hb_000362_220 Hb_000362_220 Hb_012366_040--Hb_000362_220 Hb_012366_040--Hb_001102_230 Hb_007336_040 Hb_007336_040 Hb_012366_040--Hb_007336_040 Hb_012366_040--Hb_000579_020 Hb_001001_030--Hb_007336_040 Hb_001001_030--Hb_001102_230 Hb_005321_030 Hb_005321_030 Hb_001001_030--Hb_005321_030 Hb_002471_070 Hb_002471_070 Hb_001001_030--Hb_002471_070 Hb_000107_410 Hb_000107_410 Hb_001001_030--Hb_000107_410 Hb_007044_210 Hb_007044_210 Hb_001001_030--Hb_007044_210 Hb_001960_040 Hb_001960_040 Hb_001102_230--Hb_001960_040 Hb_000472_040 Hb_000472_040 Hb_001102_230--Hb_000472_040 Hb_000300_620 Hb_000300_620 Hb_001102_230--Hb_000300_620 Hb_001102_230--Hb_000573_020 Hb_001357_140 Hb_001357_140 Hb_001102_230--Hb_001357_140 Hb_000576_010 Hb_000576_010 Hb_001102_230--Hb_000576_010 Hb_004225_020 Hb_004225_020 Hb_001252_180--Hb_004225_020 Hb_000327_340 Hb_000327_340 Hb_001252_180--Hb_000327_340 Hb_003531_060 Hb_003531_060 Hb_001252_180--Hb_003531_060 Hb_002493_100 Hb_002493_100 Hb_001252_180--Hb_002493_100 Hb_002131_020 Hb_002131_020 Hb_001252_180--Hb_002131_020 Hb_148909_010 Hb_148909_010 Hb_001252_180--Hb_148909_010 Hb_000009_170 Hb_000009_170 Hb_000573_020--Hb_000009_170 Hb_000436_070 Hb_000436_070 Hb_000573_020--Hb_000436_070 Hb_000620_010 Hb_000620_010 Hb_000573_020--Hb_000620_010 Hb_001604_010 Hb_001604_010 Hb_000573_020--Hb_001604_010 Hb_001001_060 Hb_001001_060 Hb_000573_020--Hb_001001_060 Hb_001771_140 Hb_001771_140 Hb_000573_020--Hb_001771_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.6934 3.50696 2.4976 7.04195 5.14378 3.13643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.72793 1.54263 24.5706 16.6061 2.17581

CAGE analysis