Hb_027073_010

Information

Type -
Description -
Location Contig27073: 7469-9695
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07150g
description POPTRDRAFT_256309; hypothetical protein
nr
ID XP_012074329.1
description PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
swissprot
ID A7UL74
description Protein CHROMOSOME TRANSMISSION FIDELITY 7 OS=Arabidopsis thaliana GN=CTF7 PE=1 SV=1
trembl
ID A0A067KIR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08765 PE=4 SV=1
Gene Ontology
ID GO:0000280
description protein chromosome transmission fidelity 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28381: 7623-7821 , PASA_asmbl_28382: 7339-8948 , PASA_asmbl_28387: 10576-27160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027073_010 0.0 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
2 Hb_003207_020 0.1084432014 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
3 Hb_004007_110 0.1096135296 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
4 Hb_021409_080 0.1158866015 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
5 Hb_004158_020 0.1191817336 - - Rab1 [Hevea brasiliensis]
6 Hb_003994_030 0.1195336263 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
7 Hb_028049_010 0.121913 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_012305_130 0.1230327424 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
9 Hb_002110_100 0.1246319383 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
10 Hb_000402_130 0.1250006493 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
11 Hb_032920_070 0.130137143 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
12 Hb_002804_040 0.1309909926 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
13 Hb_011249_020 0.1324613829 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
14 Hb_000428_060 0.1354336885 - - malate dehydrogenase, putative [Ricinus communis]
15 Hb_066842_010 0.1394719317 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
16 Hb_012244_010 0.1396780222 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
17 Hb_010560_050 0.1405457444 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
18 Hb_000110_050 0.1423890835 - - -
19 Hb_010997_090 0.1448873305 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
20 Hb_048476_060 0.1456298037 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_027073_010 Hb_027073_010 Hb_003207_020 Hb_003207_020 Hb_027073_010--Hb_003207_020 Hb_004007_110 Hb_004007_110 Hb_027073_010--Hb_004007_110 Hb_021409_080 Hb_021409_080 Hb_027073_010--Hb_021409_080 Hb_004158_020 Hb_004158_020 Hb_027073_010--Hb_004158_020 Hb_003994_030 Hb_003994_030 Hb_027073_010--Hb_003994_030 Hb_028049_010 Hb_028049_010 Hb_027073_010--Hb_028049_010 Hb_033152_070 Hb_033152_070 Hb_003207_020--Hb_033152_070 Hb_001486_040 Hb_001486_040 Hb_003207_020--Hb_001486_040 Hb_010042_020 Hb_010042_020 Hb_003207_020--Hb_010042_020 Hb_003207_020--Hb_003994_030 Hb_000402_130 Hb_000402_130 Hb_003207_020--Hb_000402_130 Hb_005701_120 Hb_005701_120 Hb_003207_020--Hb_005701_120 Hb_000012_110 Hb_000012_110 Hb_004007_110--Hb_000012_110 Hb_007590_090 Hb_007590_090 Hb_004007_110--Hb_007590_090 Hb_002110_100 Hb_002110_100 Hb_004007_110--Hb_002110_100 Hb_004007_110--Hb_004158_020 Hb_004007_110--Hb_028049_010 Hb_012305_130 Hb_012305_130 Hb_004007_110--Hb_012305_130 Hb_021409_080--Hb_012305_130 Hb_111985_110 Hb_111985_110 Hb_021409_080--Hb_111985_110 Hb_004627_030 Hb_004627_030 Hb_021409_080--Hb_004627_030 Hb_180343_010 Hb_180343_010 Hb_021409_080--Hb_180343_010 Hb_021409_080--Hb_002110_100 Hb_000110_120 Hb_000110_120 Hb_021409_080--Hb_000110_120 Hb_004158_020--Hb_002110_100 Hb_004158_020--Hb_000402_130 Hb_032920_070 Hb_032920_070 Hb_004158_020--Hb_032920_070 Hb_001754_080 Hb_001754_080 Hb_004158_020--Hb_001754_080 Hb_000023_310 Hb_000023_310 Hb_004158_020--Hb_000023_310 Hb_001957_010 Hb_001957_010 Hb_003994_030--Hb_001957_010 Hb_021943_090 Hb_021943_090 Hb_003994_030--Hb_021943_090 Hb_003994_030--Hb_002110_100 Hb_002193_060 Hb_002193_060 Hb_003994_030--Hb_002193_060 Hb_003994_030--Hb_005701_120 Hb_028049_010--Hb_012305_130 Hb_028049_010--Hb_000110_120 Hb_028049_010--Hb_021409_080 Hb_000771_060 Hb_000771_060 Hb_028049_010--Hb_000771_060 Hb_000428_060 Hb_000428_060 Hb_028049_010--Hb_000428_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.224579 0.114536 0.292556 1.0137 0.0621638 0.0766073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.356345 0.448283 0.403882 0.476999 0.560057

CAGE analysis