Hb_027073_030

Information

Type -
Description -
Location Contig27073: 39331-42238
Sequence    

Annotation

kegg
ID rcu:RCOM_0437800
description hypothetical protein
nr
ID XP_012074325.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
swissprot
ID Q8RWM3
description Mediator of RNA polymerase II transcription subunit 27 OS=Arabidopsis thaliana GN=MED27 PE=1 SV=1
trembl
ID A0A067KW98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08763 PE=4 SV=1
Gene Ontology
ID GO:0044237
description mediator of rna polymerase ii transcription subunit 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28392: 41096-41294 , PASA_asmbl_28393: 39204-42196
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027073_030 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
2 Hb_002928_010 0.0729971497 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
3 Hb_003579_050 0.073671087 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
4 Hb_000139_190 0.0741547857 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
5 Hb_039605_010 0.0797083573 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
6 Hb_004128_200 0.0844834508 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
7 Hb_000576_050 0.0845024903 - - Kinase superfamily protein [Theobroma cacao]
8 Hb_000402_120 0.0857540691 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
9 Hb_020367_050 0.0863602426 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
10 Hb_005965_030 0.0865300145 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
11 Hb_012384_030 0.0870121503 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
12 Hb_032208_040 0.0877475196 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
13 Hb_001776_060 0.0878117593 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
14 Hb_000260_680 0.0895757705 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
15 Hb_000983_120 0.0896721275 - - cyclin-dependent protein kinase, putative [Ricinus communis]
16 Hb_002067_030 0.0908678791 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
17 Hb_021576_100 0.0920570589 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
18 Hb_007982_080 0.0933018885 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
19 Hb_001247_130 0.0936427465 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
20 Hb_000160_350 0.094213493 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]

Gene co-expression network

sample Hb_027073_030 Hb_027073_030 Hb_002928_010 Hb_002928_010 Hb_027073_030--Hb_002928_010 Hb_003579_050 Hb_003579_050 Hb_027073_030--Hb_003579_050 Hb_000139_190 Hb_000139_190 Hb_027073_030--Hb_000139_190 Hb_039605_010 Hb_039605_010 Hb_027073_030--Hb_039605_010 Hb_004128_200 Hb_004128_200 Hb_027073_030--Hb_004128_200 Hb_000576_050 Hb_000576_050 Hb_027073_030--Hb_000576_050 Hb_002928_010--Hb_039605_010 Hb_003994_140 Hb_003994_140 Hb_002928_010--Hb_003994_140 Hb_058972_010 Hb_058972_010 Hb_002928_010--Hb_058972_010 Hb_000414_050 Hb_000414_050 Hb_002928_010--Hb_000414_050 Hb_001418_040 Hb_001418_040 Hb_002928_010--Hb_001418_040 Hb_000260_680 Hb_000260_680 Hb_003579_050--Hb_000260_680 Hb_003579_050--Hb_004128_200 Hb_001776_060 Hb_001776_060 Hb_003579_050--Hb_001776_060 Hb_000107_030 Hb_000107_030 Hb_003579_050--Hb_000107_030 Hb_027472_120 Hb_027472_120 Hb_003579_050--Hb_027472_120 Hb_010998_040 Hb_010998_040 Hb_000139_190--Hb_010998_040 Hb_000139_190--Hb_039605_010 Hb_032264_060 Hb_032264_060 Hb_000139_190--Hb_032264_060 Hb_010362_030 Hb_010362_030 Hb_000139_190--Hb_010362_030 Hb_000287_050 Hb_000287_050 Hb_000139_190--Hb_000287_050 Hb_000983_120 Hb_000983_120 Hb_039605_010--Hb_000983_120 Hb_039605_010--Hb_000287_050 Hb_039605_010--Hb_003994_140 Hb_011249_030 Hb_011249_030 Hb_039605_010--Hb_011249_030 Hb_000563_330 Hb_000563_330 Hb_039605_010--Hb_000563_330 Hb_004128_200--Hb_011249_030 Hb_001005_020 Hb_001005_020 Hb_004128_200--Hb_001005_020 Hb_001277_280 Hb_001277_280 Hb_004128_200--Hb_001277_280 Hb_004128_200--Hb_039605_010 Hb_000576_050--Hb_058972_010 Hb_000576_050--Hb_001418_040 Hb_000649_070 Hb_000649_070 Hb_000576_050--Hb_000649_070 Hb_007313_090 Hb_007313_090 Hb_000576_050--Hb_007313_090 Hb_006960_050 Hb_006960_050 Hb_000576_050--Hb_006960_050 Hb_000260_100 Hb_000260_100 Hb_000576_050--Hb_000260_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.22 13.132 21.333 5.93047 12.9536 12.5823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.26985 9.36484 7.87049 6.95504 6.9079

CAGE analysis