Hb_027073_040

Information

Type -
Description -
Location Contig27073: 45538-57298
Sequence    

Annotation

kegg
ID rcu:RCOM_0322170
description TGF-beta-inducible nuclear protein, putative
nr
ID XP_002533899.1
description TGF-beta-inducible nuclear protein, putative [Ricinus communis]
swissprot
ID Q54GN8
description Ribosome biogenesis protein NSA2 homolog OS=Dictyostelium discoideum GN=nsa2 PE=3 SV=1
trembl
ID B9T6N0
description TGF-beta-inducible nuclear protein, putative OS=Ricinus communis GN=RCOM_0322170 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosome biogenesis protein nsa2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28394: 45511-57218 , PASA_asmbl_28395: 54113-54800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027073_040 0.0 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
2 Hb_002759_060 0.0625514427 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
3 Hb_000270_370 0.065810134 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
4 Hb_033834_040 0.0676017078 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000028_140 0.0692121644 - - surfeit locus protein, putative [Ricinus communis]
6 Hb_000058_060 0.0718243649 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
7 Hb_000696_310 0.0742845933 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
8 Hb_000239_010 0.0766153218 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_155764_010 0.0768273994 - - -
10 Hb_000227_230 0.0768562504 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
11 Hb_000979_230 0.0771558834 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
12 Hb_002701_240 0.0781388804 - - PREDICTED: putative DNA helicase INO80 [Jatropha curcas]
13 Hb_003996_020 0.0784961338 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_012675_060 0.0805990302 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
15 Hb_002183_090 0.081620723 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
16 Hb_004375_100 0.0817718258 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
17 Hb_001360_050 0.0818133134 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
18 Hb_006816_530 0.082022428 - - 60S ribosomal protein L18, putative [Ricinus communis]
19 Hb_000384_100 0.0829906162 - - hydrolase, putative [Ricinus communis]
20 Hb_004218_110 0.0841962802 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]

Gene co-expression network

sample Hb_027073_040 Hb_027073_040 Hb_002759_060 Hb_002759_060 Hb_027073_040--Hb_002759_060 Hb_000270_370 Hb_000270_370 Hb_027073_040--Hb_000270_370 Hb_033834_040 Hb_033834_040 Hb_027073_040--Hb_033834_040 Hb_000028_140 Hb_000028_140 Hb_027073_040--Hb_000028_140 Hb_000058_060 Hb_000058_060 Hb_027073_040--Hb_000058_060 Hb_000696_310 Hb_000696_310 Hb_027073_040--Hb_000696_310 Hb_004218_110 Hb_004218_110 Hb_002759_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_002759_060--Hb_001833_110 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_025240_040 Hb_025240_040 Hb_002759_060--Hb_025240_040 Hb_002759_060--Hb_000058_060 Hb_000221_160 Hb_000221_160 Hb_000270_370--Hb_000221_160 Hb_000373_120 Hb_000373_120 Hb_000270_370--Hb_000373_120 Hb_000979_230 Hb_000979_230 Hb_000270_370--Hb_000979_230 Hb_000671_090 Hb_000671_090 Hb_000270_370--Hb_000671_090 Hb_000270_370--Hb_033834_040 Hb_002226_070 Hb_002226_070 Hb_033834_040--Hb_002226_070 Hb_000103_090 Hb_000103_090 Hb_033834_040--Hb_000103_090 Hb_000926_250 Hb_000926_250 Hb_033834_040--Hb_000926_250 Hb_004032_010 Hb_004032_010 Hb_033834_040--Hb_004032_010 Hb_002183_090 Hb_002183_090 Hb_033834_040--Hb_002183_090 Hb_159809_020 Hb_159809_020 Hb_033834_040--Hb_159809_020 Hb_001242_110 Hb_001242_110 Hb_000028_140--Hb_001242_110 Hb_000239_010 Hb_000239_010 Hb_000028_140--Hb_000239_010 Hb_001155_030 Hb_001155_030 Hb_000028_140--Hb_001155_030 Hb_000227_230 Hb_000227_230 Hb_000028_140--Hb_000227_230 Hb_000028_140--Hb_003996_020 Hb_000009_460 Hb_000009_460 Hb_000058_060--Hb_000009_460 Hb_007416_320 Hb_007416_320 Hb_000058_060--Hb_007416_320 Hb_005289_030 Hb_005289_030 Hb_000058_060--Hb_005289_030 Hb_000058_060--Hb_159809_020 Hb_000696_310--Hb_002759_060 Hb_155764_010 Hb_155764_010 Hb_000696_310--Hb_155764_010 Hb_000444_050 Hb_000444_050 Hb_000696_310--Hb_000444_050 Hb_000696_310--Hb_000270_370 Hb_000260_810 Hb_000260_810 Hb_000696_310--Hb_000260_810
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.2317 20.8551 19.1159 30.0184 36.1967 65.4624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.6619 104.815 74.6071 60.1754 23.1819

CAGE analysis