Hb_027073_050

Information

Type -
Description -
Location Contig27073: 58851-61334
Sequence    

Annotation

kegg
ID rcu:RCOM_0322180
description hypothetical protein
nr
ID XP_012074322.1
description PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08760 PE=4 SV=1
Gene Ontology
ID GO:0006635
description nc domain-containing isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28396: 58876-61180 , PASA_asmbl_28397: 60230-60597
cDNA
(Sanger)
(ID:Location)		 004_K16.ab1: 59159-61158 , 017_A24.ab1: 59161-61162 , 043_D20.ab1: 59158-61150 , 043_P13.ab1: 59231-61158

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027073_050 0.0 - - PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
2 Hb_001461_010 0.085363107 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
3 Hb_006569_100 0.0882565992 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
4 Hb_002918_290 0.0883674655 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
5 Hb_001904_090 0.0902840453 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
6 Hb_001191_090 0.0926916704 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
7 Hb_017413_010 0.0952899486 - - -
8 Hb_032803_010 0.0959244387 - - PREDICTED: glycosyltransferase-like At2g41451 [Jatropha curcas]
9 Hb_006846_060 0.0959482191 - - inositol hexaphosphate kinase, putative [Ricinus communis]
10 Hb_000817_030 0.0961413258 - - mak, putative [Ricinus communis]
11 Hb_000103_320 0.0962747191 - - Stem-specific protein TSJT1, putative [Ricinus communis]
12 Hb_000069_550 0.0985057652 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
13 Hb_068056_030 0.0985415997 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
14 Hb_001519_030 0.0995885648 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
15 Hb_002742_090 0.0997693311 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
16 Hb_033594_150 0.0999202848 - - unknown [Lotus japonicus]
17 Hb_006831_120 0.100127504 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
18 Hb_001396_100 0.1001523498 - - DNA binding protein, putative [Ricinus communis]
19 Hb_010042_010 0.1011809676 - - Urease accessory protein ureD, putative [Ricinus communis]
20 Hb_008544_010 0.1031480067 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_027073_050 Hb_027073_050 Hb_001461_010 Hb_001461_010 Hb_027073_050--Hb_001461_010 Hb_006569_100 Hb_006569_100 Hb_027073_050--Hb_006569_100 Hb_002918_290 Hb_002918_290 Hb_027073_050--Hb_002918_290 Hb_001904_090 Hb_001904_090 Hb_027073_050--Hb_001904_090 Hb_001191_090 Hb_001191_090 Hb_027073_050--Hb_001191_090 Hb_017413_010 Hb_017413_010 Hb_027073_050--Hb_017413_010 Hb_004374_140 Hb_004374_140 Hb_001461_010--Hb_004374_140 Hb_008544_010 Hb_008544_010 Hb_001461_010--Hb_008544_010 Hb_001842_040 Hb_001842_040 Hb_001461_010--Hb_001842_040 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_002631_020 Hb_002631_020 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060 Hb_001314_040 Hb_001314_040 Hb_006569_100--Hb_001314_040 Hb_020419_020 Hb_020419_020 Hb_006569_100--Hb_020419_020 Hb_068056_030 Hb_068056_030 Hb_006569_100--Hb_068056_030 Hb_001519_030 Hb_001519_030 Hb_006569_100--Hb_001519_030 Hb_000069_550 Hb_000069_550 Hb_006569_100--Hb_000069_550 Hb_001008_090 Hb_001008_090 Hb_006569_100--Hb_001008_090 Hb_002918_290--Hb_068056_030 Hb_001284_030 Hb_001284_030 Hb_002918_290--Hb_001284_030 Hb_000042_200 Hb_000042_200 Hb_002918_290--Hb_000042_200 Hb_000224_140 Hb_000224_140 Hb_002918_290--Hb_000224_140 Hb_033153_060 Hb_033153_060 Hb_002918_290--Hb_033153_060 Hb_004459_040 Hb_004459_040 Hb_002918_290--Hb_004459_040 Hb_001396_100 Hb_001396_100 Hb_001904_090--Hb_001396_100 Hb_027654_050 Hb_027654_050 Hb_001904_090--Hb_027654_050 Hb_001904_090--Hb_001519_030 Hb_000123_170 Hb_000123_170 Hb_001904_090--Hb_000123_170 Hb_006831_120 Hb_006831_120 Hb_001904_090--Hb_006831_120 Hb_008616_070 Hb_008616_070 Hb_001904_090--Hb_008616_070 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_003053_030 Hb_003053_030 Hb_001191_090--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_001191_090--Hb_148200_010 Hb_006573_220 Hb_006573_220 Hb_001191_090--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_001191_090--Hb_000181_300 Hb_003376_030 Hb_003376_030 Hb_001191_090--Hb_003376_030 Hb_000789_230 Hb_000789_230 Hb_017413_010--Hb_000789_230 Hb_000331_450 Hb_000331_450 Hb_017413_010--Hb_000331_450 Hb_005278_020 Hb_005278_020 Hb_017413_010--Hb_005278_020 Hb_017491_060 Hb_017491_060 Hb_017413_010--Hb_017491_060 Hb_006846_060 Hb_006846_060 Hb_017413_010--Hb_006846_060 Hb_000373_120 Hb_000373_120 Hb_017413_010--Hb_000373_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.3059 10.1141 23.6105 55.9283 41.7884 30.8492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.5425 95.2654 96.2234 30.5283 34.2503

CAGE analysis