Hb_027136_010

Information

Type -
Description -
Location Contig27136: 307-910
Sequence    

Annotation

kegg
ID rcu:RCOM_0496690
description hypothetical protein
nr
ID XP_010092538.1
description hypothetical protein L484_010426 [Morus notabilis]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID W9RD92
description Uncharacterized protein OS=Morus notabilis GN=L484_010426 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027136_010 0.0 - - hypothetical protein L484_010426 [Morus notabilis]
2 Hb_150346_010 0.0889706477 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_000635_200 0.0952601888 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
4 Hb_002375_110 0.1083527847 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
5 Hb_178968_050 0.1096966848 - - PREDICTED: probable serine incorporator [Jatropha curcas]
6 Hb_004040_040 0.1109351105 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
7 Hb_000260_780 0.1109484473 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
8 Hb_003939_040 0.1116134858 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
9 Hb_132840_100 0.1129355387 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
10 Hb_000176_130 0.1147762524 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
11 Hb_004645_070 0.1179974716 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
12 Hb_000739_080 0.1187704844 - - PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Jatropha curcas]
13 Hb_002902_080 0.1212651672 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
14 Hb_000680_110 0.1214843963 - - Endosomal P24A protein precursor, putative [Ricinus communis]
15 Hb_002092_070 0.1245868028 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
16 Hb_007186_020 0.1248805505 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
17 Hb_000630_030 0.1262661529 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
18 Hb_000098_050 0.1265339639 - - BnaCnng11900D [Brassica napus]
19 Hb_003417_010 0.127015686 - - PREDICTED: protein TPLATE [Jatropha curcas]
20 Hb_012239_030 0.1289222303 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_027136_010 Hb_027136_010 Hb_150346_010 Hb_150346_010 Hb_027136_010--Hb_150346_010 Hb_000635_200 Hb_000635_200 Hb_027136_010--Hb_000635_200 Hb_002375_110 Hb_002375_110 Hb_027136_010--Hb_002375_110 Hb_178968_050 Hb_178968_050 Hb_027136_010--Hb_178968_050 Hb_004040_040 Hb_004040_040 Hb_027136_010--Hb_004040_040 Hb_000260_780 Hb_000260_780 Hb_027136_010--Hb_000260_780 Hb_150346_010--Hb_000260_780 Hb_000284_230 Hb_000284_230 Hb_150346_010--Hb_000284_230 Hb_150346_010--Hb_178968_050 Hb_000205_280 Hb_000205_280 Hb_150346_010--Hb_000205_280 Hb_000580_050 Hb_000580_050 Hb_150346_010--Hb_000580_050 Hb_004645_070 Hb_004645_070 Hb_000635_200--Hb_004645_070 Hb_002092_070 Hb_002092_070 Hb_000635_200--Hb_002092_070 Hb_000010_420 Hb_000010_420 Hb_000635_200--Hb_000010_420 Hb_002045_250 Hb_002045_250 Hb_000635_200--Hb_002045_250 Hb_004429_010 Hb_004429_010 Hb_000635_200--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000635_200--Hb_002284_170 Hb_000176_130 Hb_000176_130 Hb_002375_110--Hb_000176_130 Hb_061878_010 Hb_061878_010 Hb_002375_110--Hb_061878_010 Hb_054885_020 Hb_054885_020 Hb_002375_110--Hb_054885_020 Hb_009367_080 Hb_009367_080 Hb_002375_110--Hb_009367_080 Hb_001989_050 Hb_001989_050 Hb_002375_110--Hb_001989_050 Hb_028472_010 Hb_028472_010 Hb_002375_110--Hb_028472_010 Hb_000608_230 Hb_000608_230 Hb_178968_050--Hb_000608_230 Hb_000130_020 Hb_000130_020 Hb_178968_050--Hb_000130_020 Hb_140049_080 Hb_140049_080 Hb_178968_050--Hb_140049_080 Hb_000365_030 Hb_000365_030 Hb_178968_050--Hb_000365_030 Hb_002686_040 Hb_002686_040 Hb_178968_050--Hb_002686_040 Hb_004109_370 Hb_004109_370 Hb_178968_050--Hb_004109_370 Hb_002370_030 Hb_002370_030 Hb_004040_040--Hb_002370_030 Hb_030736_070 Hb_030736_070 Hb_004040_040--Hb_030736_070 Hb_004040_040--Hb_054885_020 Hb_004040_040--Hb_150346_010 Hb_007186_020 Hb_007186_020 Hb_004040_040--Hb_007186_020 Hb_009252_050 Hb_009252_050 Hb_000260_780--Hb_009252_050 Hb_000260_780--Hb_002092_070 Hb_000260_780--Hb_000205_280 Hb_000358_100 Hb_000358_100 Hb_000260_780--Hb_000358_100 Hb_000260_780--Hb_000580_050 Hb_000020_160 Hb_000020_160 Hb_000260_780--Hb_000020_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.487189 1.19595 0.517144 1.28664 0.929391 0.990755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.137834 0.108281 0.365646 0.811501 0.60507

CAGE analysis