Hb_027136_040

Information

Type -
Description -
Location Contig27136: 14756-16958
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID KDP42480.1
description hypothetical protein JCGZ_00277 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LDA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00277 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027136_040 0.0 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
2 Hb_005504_030 0.127884387 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
3 Hb_000271_120 0.1330714863 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
4 Hb_005883_110 0.1396854221 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
5 Hb_000345_320 0.1439985351 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
6 Hb_011925_020 0.1444193405 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_000009_140 0.1452373158 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
8 Hb_000007_410 0.1456809079 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
9 Hb_002524_020 0.1484964076 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
10 Hb_002995_040 0.1543454296 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
11 Hb_110558_010 0.1566786093 - - PREDICTED: uncharacterized protein LOC105641877 [Jatropha curcas]
12 Hb_004586_240 0.1583317746 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
13 Hb_000205_250 0.1586312808 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
14 Hb_060094_010 0.1596640274 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
15 Hb_003266_020 0.1601010376 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
16 Hb_000161_240 0.1622766064 - - PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
17 Hb_010068_070 0.163232912 - - calcium-dependent protein kinase, putative [Ricinus communis]
18 Hb_000926_260 0.1633247494 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006468_010 0.1655344424 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
20 Hb_080147_020 0.1655473317 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_027136_040 Hb_027136_040 Hb_005504_030 Hb_005504_030 Hb_027136_040--Hb_005504_030 Hb_000271_120 Hb_000271_120 Hb_027136_040--Hb_000271_120 Hb_005883_110 Hb_005883_110 Hb_027136_040--Hb_005883_110 Hb_000345_320 Hb_000345_320 Hb_027136_040--Hb_000345_320 Hb_011925_020 Hb_011925_020 Hb_027136_040--Hb_011925_020 Hb_000009_140 Hb_000009_140 Hb_027136_040--Hb_000009_140 Hb_005504_030--Hb_000009_140 Hb_004586_240 Hb_004586_240 Hb_005504_030--Hb_004586_240 Hb_033363_010 Hb_033363_010 Hb_005504_030--Hb_033363_010 Hb_000258_090 Hb_000258_090 Hb_005504_030--Hb_000258_090 Hb_000072_020 Hb_000072_020 Hb_005504_030--Hb_000072_020 Hb_010068_070 Hb_010068_070 Hb_005504_030--Hb_010068_070 Hb_000271_120--Hb_011925_020 Hb_000205_250 Hb_000205_250 Hb_000271_120--Hb_000205_250 Hb_000007_410 Hb_000007_410 Hb_000271_120--Hb_000007_410 Hb_000049_250 Hb_000049_250 Hb_000271_120--Hb_000049_250 Hb_000220_120 Hb_000220_120 Hb_000271_120--Hb_000220_120 Hb_001006_010 Hb_001006_010 Hb_000271_120--Hb_001006_010 Hb_000109_260 Hb_000109_260 Hb_005883_110--Hb_000109_260 Hb_003266_020 Hb_003266_020 Hb_005883_110--Hb_003266_020 Hb_000976_110 Hb_000976_110 Hb_005883_110--Hb_000976_110 Hb_000318_150 Hb_000318_150 Hb_005883_110--Hb_000318_150 Hb_003490_060 Hb_003490_060 Hb_005883_110--Hb_003490_060 Hb_027402_130 Hb_027402_130 Hb_005883_110--Hb_027402_130 Hb_002276_040 Hb_002276_040 Hb_000345_320--Hb_002276_040 Hb_082741_010 Hb_082741_010 Hb_000345_320--Hb_082741_010 Hb_000209_100 Hb_000209_100 Hb_000345_320--Hb_000209_100 Hb_006916_110 Hb_006916_110 Hb_000345_320--Hb_006916_110 Hb_010872_050 Hb_010872_050 Hb_000345_320--Hb_010872_050 Hb_000144_120 Hb_000144_120 Hb_000345_320--Hb_000144_120 Hb_011925_020--Hb_000049_250 Hb_005074_020 Hb_005074_020 Hb_011925_020--Hb_005074_020 Hb_000080_110 Hb_000080_110 Hb_011925_020--Hb_000080_110 Hb_000321_090 Hb_000321_090 Hb_011925_020--Hb_000321_090 Hb_005181_050 Hb_005181_050 Hb_011925_020--Hb_005181_050 Hb_000009_140--Hb_004586_240 Hb_000009_140--Hb_033363_010 Hb_000009_140--Hb_000072_020 Hb_009646_010 Hb_009646_010 Hb_000009_140--Hb_009646_010 Hb_000009_140--Hb_010068_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.592758 1.03036 0.973532 0.844951 0.043641 0.291935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.348654 0.156696 0.216512 1.27562 0.641759

CAGE analysis