Hb_027204_010

Information

Type -
Description -
Location Contig27204: 20071-30583
Sequence    

Annotation

kegg
ID tcc:TCM_009053
description DNA/RNA polymerases superfamily protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A061E4Q3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009053 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC104119560

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027204_010 0.0 - - -
2 Hb_065661_010 0.1889167447 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
3 Hb_024468_040 0.2298310427 - - -
4 Hb_000045_060 0.2560755998 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_181402_010 0.2648894817 - - PREDICTED: uncharacterized protein LOC104905886 [Beta vulgaris subsp. vulgaris]
6 Hb_000392_510 0.2688639637 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
7 Hb_000640_280 0.2689298628 - - Stachyose synthase precursor, putative [Ricinus communis]
8 Hb_011288_010 0.2751862239 - - hypothetical protein, partial [Pseudomonas fluorescens]
9 Hb_031939_020 0.2780646984 - - -
10 Hb_000796_050 0.2798125898 - - galactinol synthase [Manihot esculenta]
11 Hb_042463_050 0.2882938504 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003717_020 0.3085482801 - - -
13 Hb_002890_350 0.3104175849 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
14 Hb_137338_010 0.3163031758 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
15 Hb_009785_020 0.3198499044 - - PREDICTED: nucleolin [Populus euphratica]
16 Hb_007193_050 0.3322419491 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_034013_010 0.3358424038 - - hypothetical protein JCGZ_21944 [Jatropha curcas]
18 Hb_005401_010 0.3359296996 - - -
19 Hb_000002_090 0.3393917655 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
20 Hb_006573_010 0.3395993131 - - heat shock protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_027204_010 Hb_027204_010 Hb_065661_010 Hb_065661_010 Hb_027204_010--Hb_065661_010 Hb_024468_040 Hb_024468_040 Hb_027204_010--Hb_024468_040 Hb_000045_060 Hb_000045_060 Hb_027204_010--Hb_000045_060 Hb_181402_010 Hb_181402_010 Hb_027204_010--Hb_181402_010 Hb_000392_510 Hb_000392_510 Hb_027204_010--Hb_000392_510 Hb_000640_280 Hb_000640_280 Hb_027204_010--Hb_000640_280 Hb_065661_010--Hb_000045_060 Hb_002092_140 Hb_002092_140 Hb_065661_010--Hb_002092_140 Hb_166828_010 Hb_166828_010 Hb_065661_010--Hb_166828_010 Hb_065661_010--Hb_000640_280 Hb_000002_280 Hb_000002_280 Hb_065661_010--Hb_000002_280 Hb_042463_050 Hb_042463_050 Hb_024468_040--Hb_042463_050 Hb_132317_010 Hb_132317_010 Hb_024468_040--Hb_132317_010 Hb_000473_160 Hb_000473_160 Hb_024468_040--Hb_000473_160 Hb_007193_050 Hb_007193_050 Hb_024468_040--Hb_007193_050 Hb_006405_040 Hb_006405_040 Hb_024468_040--Hb_006405_040 Hb_118014_010 Hb_118014_010 Hb_000045_060--Hb_118014_010 Hb_027380_250 Hb_027380_250 Hb_000045_060--Hb_027380_250 Hb_000045_060--Hb_007193_050 Hb_004981_010 Hb_004981_010 Hb_000045_060--Hb_004981_010 Hb_003717_020 Hb_003717_020 Hb_000045_060--Hb_003717_020 Hb_181402_010--Hb_003717_020 Hb_181402_010--Hb_004981_010 Hb_055314_010 Hb_055314_010 Hb_181402_010--Hb_055314_010 Hb_001758_030 Hb_001758_030 Hb_181402_010--Hb_001758_030 Hb_181402_010--Hb_042463_050 Hb_000286_180 Hb_000286_180 Hb_000392_510--Hb_000286_180 Hb_007137_020 Hb_007137_020 Hb_000392_510--Hb_007137_020 Hb_001899_040 Hb_001899_040 Hb_000392_510--Hb_001899_040 Hb_002218_060 Hb_002218_060 Hb_000392_510--Hb_002218_060 Hb_009898_060 Hb_009898_060 Hb_000392_510--Hb_009898_060 Hb_000392_510--Hb_000640_280 Hb_000640_280--Hb_000002_280 Hb_000243_310 Hb_000243_310 Hb_000640_280--Hb_000243_310 Hb_002890_350 Hb_002890_350 Hb_000640_280--Hb_002890_350 Hb_000300_240 Hb_000300_240 Hb_000640_280--Hb_000300_240 Hb_011344_150 Hb_011344_150 Hb_000640_280--Hb_011344_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0870478 0 0.0113398 0.0132938 0.014299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0531677

CAGE analysis