Hb_027242_010

Information

Type -
Description -
Location Contig27242: 9873-15961
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08670g
description pathogenesis-related family protein
nr
ID XP_011002601.1
description PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
swissprot
ID P11670
description Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1
trembl
ID U5G0F8
description Pathogenesis-related family protein OS=Populus trichocarpa GN=POPTR_0009s08670g PE=4 SV=1
Gene Ontology
ID GO:0005576
description pathogenesis-related protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027242_010 0.0 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
2 Hb_003480_010 0.0936340762 - - cytochrome P450 family protein [Populus trichocarpa]
3 Hb_001102_060 0.0987465701 - - PREDICTED: receptor-like serine/threonine-protein kinase At1g78530 isoform X1 [Jatropha curcas]
4 Hb_178252_010 0.1112527497 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
5 Hb_000101_370 0.1351954997 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
6 Hb_000057_210 0.1371010822 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
7 Hb_069151_010 0.1403401682 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
8 Hb_010053_010 0.1423965762 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
9 Hb_032621_010 0.1525236562 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
10 Hb_001377_480 0.1525881494 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
11 Hb_187211_010 0.1553051428 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
12 Hb_002081_220 0.1572466393 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
13 Hb_055154_010 0.1612021276 - - PREDICTED: laccase-7 [Jatropha curcas]
14 Hb_003166_020 0.164040617 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
15 Hb_140049_060 0.1686498635 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
16 Hb_003020_340 0.1767731206 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
17 Hb_026650_010 0.1781628826 - - nitrate transporter, putative [Ricinus communis]
18 Hb_000625_130 0.1818769324 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
19 Hb_021888_010 0.1818870517 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
20 Hb_164300_010 0.1869459222 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]

Gene co-expression network

sample Hb_027242_010 Hb_027242_010 Hb_003480_010 Hb_003480_010 Hb_027242_010--Hb_003480_010 Hb_001102_060 Hb_001102_060 Hb_027242_010--Hb_001102_060 Hb_178252_010 Hb_178252_010 Hb_027242_010--Hb_178252_010 Hb_000101_370 Hb_000101_370 Hb_027242_010--Hb_000101_370 Hb_000057_210 Hb_000057_210 Hb_027242_010--Hb_000057_210 Hb_069151_010 Hb_069151_010 Hb_027242_010--Hb_069151_010 Hb_003480_010--Hb_069151_010 Hb_055154_010 Hb_055154_010 Hb_003480_010--Hb_055154_010 Hb_003480_010--Hb_178252_010 Hb_003020_340 Hb_003020_340 Hb_003480_010--Hb_003020_340 Hb_003480_010--Hb_000057_210 Hb_001102_060--Hb_178252_010 Hb_007017_120 Hb_007017_120 Hb_001102_060--Hb_007017_120 Hb_001102_060--Hb_003480_010 Hb_001102_060--Hb_000101_370 Hb_000364_130 Hb_000364_130 Hb_001102_060--Hb_000364_130 Hb_002809_020 Hb_002809_020 Hb_178252_010--Hb_002809_020 Hb_178252_010--Hb_007017_120 Hb_178252_010--Hb_055154_010 Hb_164300_010 Hb_164300_010 Hb_000101_370--Hb_164300_010 Hb_000215_420 Hb_000215_420 Hb_000101_370--Hb_000215_420 Hb_001377_480 Hb_001377_480 Hb_000101_370--Hb_001377_480 Hb_002081_220 Hb_002081_220 Hb_000101_370--Hb_002081_220 Hb_006573_260 Hb_006573_260 Hb_000101_370--Hb_006573_260 Hb_003119_120 Hb_003119_120 Hb_000057_210--Hb_003119_120 Hb_140049_060 Hb_140049_060 Hb_000057_210--Hb_140049_060 Hb_187211_010 Hb_187211_010 Hb_000057_210--Hb_187211_010 Hb_027028_010 Hb_027028_010 Hb_000057_210--Hb_027028_010 Hb_000668_070 Hb_000668_070 Hb_069151_010--Hb_000668_070 Hb_000800_060 Hb_000800_060 Hb_069151_010--Hb_000800_060 Hb_090510_010 Hb_090510_010 Hb_069151_010--Hb_090510_010 Hb_069151_010--Hb_055154_010 Hb_069151_010--Hb_140049_060 Hb_003166_020 Hb_003166_020 Hb_069151_010--Hb_003166_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.235106 62.5778 26.378 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.877936 0 0.450291 113.547 1.73369

CAGE analysis