Hb_027295_050

Information

Type -
Description -
Location Contig27295: 40070-43145
Sequence    

Annotation

kegg
ID rcu:RCOM_1303150
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012076812.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
swissprot
ID Q9FKC3
description Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2
trembl
ID A0A067LME3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17186 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28508: 40090-41982 , PASA_asmbl_28511: 42196-42375
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027295_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
2 Hb_000201_100 0.0600285842 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
3 Hb_008554_030 0.066825013 - - PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
4 Hb_017358_030 0.0713977078 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
5 Hb_000453_050 0.0719572489 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
6 Hb_013607_030 0.0733677995 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
7 Hb_000165_250 0.0737517644 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
8 Hb_000917_060 0.0757233436 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
9 Hb_077562_050 0.0757924889 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
10 Hb_000029_050 0.0830685073 - - expressed protein, putative [Ricinus communis]
11 Hb_000866_410 0.0837091529 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
12 Hb_000866_260 0.085091342 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
13 Hb_002035_120 0.0856860956 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14330 [Jatropha curcas]
14 Hb_002888_030 0.0865716836 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
15 Hb_008221_180 0.0889829214 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
16 Hb_011316_050 0.0910019483 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
17 Hb_002027_250 0.0918972341 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_001247_250 0.0924432444 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
19 Hb_000291_050 0.0934801101 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
20 Hb_000856_110 0.0941814795 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_027295_050 Hb_027295_050 Hb_000201_100 Hb_000201_100 Hb_027295_050--Hb_000201_100 Hb_008554_030 Hb_008554_030 Hb_027295_050--Hb_008554_030 Hb_017358_030 Hb_017358_030 Hb_027295_050--Hb_017358_030 Hb_000453_050 Hb_000453_050 Hb_027295_050--Hb_000453_050 Hb_013607_030 Hb_013607_030 Hb_027295_050--Hb_013607_030 Hb_000165_250 Hb_000165_250 Hb_027295_050--Hb_000165_250 Hb_001247_250 Hb_001247_250 Hb_000201_100--Hb_001247_250 Hb_000172_430 Hb_000172_430 Hb_000201_100--Hb_000172_430 Hb_000201_100--Hb_000165_250 Hb_000029_050 Hb_000029_050 Hb_000201_100--Hb_000029_050 Hb_000289_060 Hb_000289_060 Hb_000201_100--Hb_000289_060 Hb_008554_030--Hb_017358_030 Hb_007632_030 Hb_007632_030 Hb_008554_030--Hb_007632_030 Hb_007389_010 Hb_007389_010 Hb_008554_030--Hb_007389_010 Hb_008554_030--Hb_000165_250 Hb_005496_130 Hb_005496_130 Hb_008554_030--Hb_005496_130 Hb_017358_030--Hb_000165_250 Hb_000866_260 Hb_000866_260 Hb_017358_030--Hb_000866_260 Hb_017358_030--Hb_007389_010 Hb_002739_100 Hb_002739_100 Hb_017358_030--Hb_002739_100 Hb_017358_030--Hb_000029_050 Hb_000917_060 Hb_000917_060 Hb_017358_030--Hb_000917_060 Hb_029142_060 Hb_029142_060 Hb_000453_050--Hb_029142_060 Hb_000453_050--Hb_000917_060 Hb_000205_190 Hb_000205_190 Hb_000453_050--Hb_000205_190 Hb_000866_010 Hb_000866_010 Hb_000453_050--Hb_000866_010 Hb_000866_410 Hb_000866_410 Hb_000453_050--Hb_000866_410 Hb_004100_080 Hb_004100_080 Hb_013607_030--Hb_004100_080 Hb_006502_090 Hb_006502_090 Hb_013607_030--Hb_006502_090 Hb_000317_050 Hb_000317_050 Hb_013607_030--Hb_000317_050 Hb_002013_020 Hb_002013_020 Hb_013607_030--Hb_002013_020 Hb_002154_100 Hb_002154_100 Hb_013607_030--Hb_002154_100 Hb_000165_250--Hb_000029_050 Hb_004221_020 Hb_004221_020 Hb_000165_250--Hb_004221_020 Hb_006649_050 Hb_006649_050 Hb_000165_250--Hb_006649_050 Hb_000165_250--Hb_005496_130 Hb_000291_050 Hb_000291_050 Hb_000165_250--Hb_000291_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5215 10.8472 10.3849 4.3018 13.2579 11.3226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.41103 13.928 13.3971 5.77638 11.3557

CAGE analysis