Hb_027337_020

Information

Type -
Description -
Location Contig27337: 24738-26849
Sequence    

Annotation

kegg
ID rcu:RCOM_0776830
description sodium/hydrogen exchanger plant, putative
nr
ID XP_002521897.1
description sodium/hydrogen exchanger plant, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7C8
description Sodium/hydrogen exchanger plant, putative OS=Ricinus communis GN=RCOM_0776830 PE=4 SV=1
Gene Ontology
ID GO:0015297
description sodium hydrogen exchanger 8-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28536: 24470-24830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027337_020 0.0 - - sodium/hydrogen exchanger plant, putative [Ricinus communis]
2 Hb_011485_060 0.1063653278 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
3 Hb_000189_320 0.1086683172 - - PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Jatropha curcas]
4 Hb_005257_010 0.1194215992 - - hypothetical protein POPTR_0002s05320g [Populus trichocarpa]
5 Hb_114151_020 0.1200935279 - - glucan water dikinase 2 [Manihot esculenta]
6 Hb_003683_010 0.1283881986 - - longevity assurance factor, putative [Ricinus communis]
7 Hb_002213_020 0.134677481 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
8 Hb_000896_050 0.1355514597 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
9 Hb_004785_080 0.1369701928 - - hypothetical protein POPTR_0005s21250g [Populus trichocarpa]
10 Hb_000749_090 0.1407651981 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000109_260 0.1412806994 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
12 Hb_000731_010 0.1424202312 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
13 Hb_000358_050 0.1426767516 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
14 Hb_003117_030 0.1435570981 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
15 Hb_000059_240 0.1436816903 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
16 Hb_006031_010 0.1445253433 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
17 Hb_007413_010 0.1448646276 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
18 Hb_055062_040 0.1450989317 - - ceramidase, putative [Ricinus communis]
19 Hb_000890_070 0.1457854121 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
20 Hb_004957_030 0.1467409143 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]

Gene co-expression network

sample Hb_027337_020 Hb_027337_020 Hb_011485_060 Hb_011485_060 Hb_027337_020--Hb_011485_060 Hb_000189_320 Hb_000189_320 Hb_027337_020--Hb_000189_320 Hb_005257_010 Hb_005257_010 Hb_027337_020--Hb_005257_010 Hb_114151_020 Hb_114151_020 Hb_027337_020--Hb_114151_020 Hb_003683_010 Hb_003683_010 Hb_027337_020--Hb_003683_010 Hb_002213_020 Hb_002213_020 Hb_027337_020--Hb_002213_020 Hb_000358_050 Hb_000358_050 Hb_011485_060--Hb_000358_050 Hb_000890_070 Hb_000890_070 Hb_011485_060--Hb_000890_070 Hb_011485_060--Hb_002213_020 Hb_004048_120 Hb_004048_120 Hb_011485_060--Hb_004048_120 Hb_004208_050 Hb_004208_050 Hb_011485_060--Hb_004208_050 Hb_000059_240 Hb_000059_240 Hb_011485_060--Hb_000059_240 Hb_004327_040 Hb_004327_040 Hb_000189_320--Hb_004327_040 Hb_003117_030 Hb_003117_030 Hb_000189_320--Hb_003117_030 Hb_003734_010 Hb_003734_010 Hb_000189_320--Hb_003734_010 Hb_008387_020 Hb_008387_020 Hb_000189_320--Hb_008387_020 Hb_000011_270 Hb_000011_270 Hb_000189_320--Hb_000011_270 Hb_000568_050 Hb_000568_050 Hb_000189_320--Hb_000568_050 Hb_001925_060 Hb_001925_060 Hb_005257_010--Hb_001925_060 Hb_006031_010 Hb_006031_010 Hb_005257_010--Hb_006031_010 Hb_001614_060 Hb_001614_060 Hb_005257_010--Hb_001614_060 Hb_003768_050 Hb_003768_050 Hb_005257_010--Hb_003768_050 Hb_007083_030 Hb_007083_030 Hb_005257_010--Hb_007083_030 Hb_114151_020--Hb_006031_010 Hb_000035_010 Hb_000035_010 Hb_114151_020--Hb_000035_010 Hb_114151_020--Hb_000189_320 Hb_009486_090 Hb_009486_090 Hb_114151_020--Hb_009486_090 Hb_000196_060 Hb_000196_060 Hb_114151_020--Hb_000196_060 Hb_114151_020--Hb_004327_040 Hb_000742_170 Hb_000742_170 Hb_003683_010--Hb_000742_170 Hb_028960_030 Hb_028960_030 Hb_003683_010--Hb_028960_030 Hb_003777_290 Hb_003777_290 Hb_003683_010--Hb_003777_290 Hb_000009_030 Hb_000009_030 Hb_003683_010--Hb_000009_030 Hb_163256_010 Hb_163256_010 Hb_003683_010--Hb_163256_010 Hb_005489_040 Hb_005489_040 Hb_003683_010--Hb_005489_040 Hb_004677_050 Hb_004677_050 Hb_002213_020--Hb_004677_050 Hb_000984_170 Hb_000984_170 Hb_002213_020--Hb_000984_170 Hb_002213_020--Hb_004208_050 Hb_002213_020--Hb_000358_050 Hb_002213_020--Hb_001925_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.53602 0.868382 0.675876 0.799898 0.265785 0.923995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.968914 0.326501 0.294782 1.45467 1.74441

CAGE analysis