Hb_027337_050

Information

Type -
Description -
Location Contig27337: 33735-38038
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID YP_008992013.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QF33
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0005488
description polyprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027337_050 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_001899_040 0.1336677963 - - PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]
3 Hb_130579_050 0.1500752568 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
4 Hb_172426_010 0.1536659578 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
5 Hb_002025_240 0.1627962681 - - -
6 Hb_001205_170 0.1637242712 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
7 Hb_003727_060 0.1674133012 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_007575_020 0.1714835474 - - cytochrome P450, putative [Ricinus communis]
9 Hb_004191_030 0.1730493723 - - hypothetical protein POPTR_0013s13140g [Populus trichocarpa]
10 Hb_004063_010 0.1731097983 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_002056_140 0.1761067243 - - -
12 Hb_003442_120 0.1800469129 - - hypothetical protein VITISV_019818 [Vitis vinifera]
13 Hb_118046_010 0.1810514593 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
14 Hb_009898_060 0.1849976721 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
15 Hb_005852_010 0.1868990799 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_000236_430 0.1902811448 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
17 Hb_000243_310 0.1991378274 - - lactoylglutathione lyase, putative [Ricinus communis]
18 Hb_004884_210 0.2012843551 - - PREDICTED: mitoferrin-like [Jatropha curcas]
19 Hb_000300_240 0.2049216768 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
20 Hb_038190_030 0.2061754353 - - -

Gene co-expression network

sample Hb_027337_050 Hb_027337_050 Hb_001899_040 Hb_001899_040 Hb_027337_050--Hb_001899_040 Hb_130579_050 Hb_130579_050 Hb_027337_050--Hb_130579_050 Hb_172426_010 Hb_172426_010 Hb_027337_050--Hb_172426_010 Hb_002025_240 Hb_002025_240 Hb_027337_050--Hb_002025_240 Hb_001205_170 Hb_001205_170 Hb_027337_050--Hb_001205_170 Hb_003727_060 Hb_003727_060 Hb_027337_050--Hb_003727_060 Hb_002571_050 Hb_002571_050 Hb_001899_040--Hb_002571_050 Hb_009898_060 Hb_009898_060 Hb_001899_040--Hb_009898_060 Hb_000300_240 Hb_000300_240 Hb_001899_040--Hb_000300_240 Hb_038190_030 Hb_038190_030 Hb_001899_040--Hb_038190_030 Hb_000002_280 Hb_000002_280 Hb_001899_040--Hb_000002_280 Hb_130579_050--Hb_002025_240 Hb_003442_120 Hb_003442_120 Hb_130579_050--Hb_003442_120 Hb_118046_010 Hb_118046_010 Hb_130579_050--Hb_118046_010 Hb_004063_010 Hb_004063_010 Hb_130579_050--Hb_004063_010 Hb_130579_050--Hb_003727_060 Hb_000028_270 Hb_000028_270 Hb_130579_050--Hb_000028_270 Hb_000417_150 Hb_000417_150 Hb_172426_010--Hb_000417_150 Hb_004994_200 Hb_004994_200 Hb_172426_010--Hb_004994_200 Hb_000236_430 Hb_000236_430 Hb_172426_010--Hb_000236_430 Hb_004884_210 Hb_004884_210 Hb_172426_010--Hb_004884_210 Hb_172426_010--Hb_001205_170 Hb_002025_240--Hb_003442_120 Hb_002025_240--Hb_118046_010 Hb_002025_240--Hb_004063_010 Hb_002025_240--Hb_003727_060 Hb_001999_050 Hb_001999_050 Hb_001205_170--Hb_001999_050 Hb_001205_170--Hb_004884_210 Hb_007575_020 Hb_007575_020 Hb_001205_170--Hb_007575_020 Hb_034013_010 Hb_034013_010 Hb_001205_170--Hb_034013_010 Hb_003727_060--Hb_004063_010 Hb_003727_060--Hb_118046_010 Hb_002585_060 Hb_002585_060 Hb_003727_060--Hb_002585_060 Hb_003727_060--Hb_003442_120 Hb_003938_100 Hb_003938_100 Hb_003727_060--Hb_003938_100 Hb_003727_060--Hb_038190_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.163457 0.0109365 0.00331782 0.00484976 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0205347 0.148103

CAGE analysis