Hb_027337_090

Information

Type -
Description -
Location Contig27337: 48658-52306
Sequence    

Annotation

kegg
ID mdm:103414364
description sodium/hydrogen exchanger 7-like
nr
ID XP_008350980.1
description PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
swissprot
ID Q9LKW9
description Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana GN=NHX7 PE=1 SV=1
trembl
ID H9DVC6
description Plasmalemma Na+/H+ antiporter OS=Cucumis sativus GN=sos1 PE=2 SV=1
Gene Ontology
ID GO:0044765
description sodium hydrogen exchanger 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027337_090 0.0 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
2 Hb_000261_150 0.1038875111 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001699_280 0.107683882 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
4 Hb_001662_180 0.111514461 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
5 Hb_000083_270 0.1233506404 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
6 Hb_188063_010 0.1241681774 - - hypothetical protein RCOM_1469330 [Ricinus communis]
7 Hb_002095_070 0.1298967872 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
8 Hb_000105_040 0.1306179912 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
9 Hb_000656_060 0.1307746987 - - DNA binding protein, putative [Ricinus communis]
10 Hb_143489_020 0.1317070081 - - -
11 Hb_002805_210 0.1318079466 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
12 Hb_011021_050 0.1322292494 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
13 Hb_001085_030 0.1334601074 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
14 Hb_005186_040 0.1346491368 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
15 Hb_010487_020 0.1378803524 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
16 Hb_000574_530 0.1394671862 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
17 Hb_004109_380 0.1395950788 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
18 Hb_001951_170 0.1401019197 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
19 Hb_006531_020 0.1403606753 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
20 Hb_012184_060 0.1407158361 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_027337_090 Hb_027337_090 Hb_000261_150 Hb_000261_150 Hb_027337_090--Hb_000261_150 Hb_001699_280 Hb_001699_280 Hb_027337_090--Hb_001699_280 Hb_001662_180 Hb_001662_180 Hb_027337_090--Hb_001662_180 Hb_000083_270 Hb_000083_270 Hb_027337_090--Hb_000083_270 Hb_188063_010 Hb_188063_010 Hb_027337_090--Hb_188063_010 Hb_002095_070 Hb_002095_070 Hb_027337_090--Hb_002095_070 Hb_000261_150--Hb_001699_280 Hb_000261_150--Hb_188063_010 Hb_000083_070 Hb_000083_070 Hb_000261_150--Hb_000083_070 Hb_005186_040 Hb_005186_040 Hb_000261_150--Hb_005186_040 Hb_000025_710 Hb_000025_710 Hb_000261_150--Hb_000025_710 Hb_000261_150--Hb_002095_070 Hb_000105_040 Hb_000105_040 Hb_001699_280--Hb_000105_040 Hb_001699_280--Hb_188063_010 Hb_003581_170 Hb_003581_170 Hb_001699_280--Hb_003581_170 Hb_001699_280--Hb_001662_180 Hb_001951_170 Hb_001951_170 Hb_001699_280--Hb_001951_170 Hb_001662_180--Hb_001951_170 Hb_000175_120 Hb_000175_120 Hb_001662_180--Hb_000175_120 Hb_001124_050 Hb_001124_050 Hb_001662_180--Hb_001124_050 Hb_005832_010 Hb_005832_010 Hb_001662_180--Hb_005832_010 Hb_014497_020 Hb_014497_020 Hb_001662_180--Hb_014497_020 Hb_000083_270--Hb_001699_280 Hb_000631_110 Hb_000631_110 Hb_000083_270--Hb_000631_110 Hb_000340_490 Hb_000340_490 Hb_000083_270--Hb_000340_490 Hb_002005_080 Hb_002005_080 Hb_000083_270--Hb_002005_080 Hb_004705_020 Hb_004705_020 Hb_000083_270--Hb_004705_020 Hb_001628_070 Hb_001628_070 Hb_000083_270--Hb_001628_070 Hb_002333_050 Hb_002333_050 Hb_188063_010--Hb_002333_050 Hb_188063_010--Hb_000025_710 Hb_009486_170 Hb_009486_170 Hb_188063_010--Hb_009486_170 Hb_188063_010--Hb_003581_170 Hb_003211_040 Hb_003211_040 Hb_002095_070--Hb_003211_040 Hb_002095_070--Hb_000083_070 Hb_000836_020 Hb_000836_020 Hb_002095_070--Hb_000836_020 Hb_003805_050 Hb_003805_050 Hb_002095_070--Hb_003805_050 Hb_001085_030 Hb_001085_030 Hb_002095_070--Hb_001085_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0700792 0.390147 0.0710564 0.0745808 0.132929 0.187172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.107087 0.12633 0.077278 0.305156 0.2576

CAGE analysis