Hb_027346_020

Information

Type -
Description -
Location Contig27346: 25634-32694
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027346_020 0.0 - - -
2 Hb_159352_010 0.0898133481 - - hypothetical protein JCGZ_12393 [Jatropha curcas]
3 Hb_000720_190 0.1564171195 - - unknown [Populus trichocarpa x Populus deltoides]
4 Hb_008864_060 0.1802350686 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
5 Hb_000450_020 0.1830160748 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001276_060 0.1894222631 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
7 Hb_002326_170 0.1995440487 - - Protein Z, putative [Ricinus communis]
8 Hb_001373_100 0.2058609963 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002099_050 0.207650155 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011671_400 0.2092244069 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
11 Hb_023051_020 0.2094652323 - - -
12 Hb_001959_260 0.2095266652 - - -
13 Hb_005000_160 0.2110806182 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
14 Hb_003211_050 0.2174781735 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
15 Hb_009838_040 0.2182938458 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
16 Hb_001579_140 0.2193796048 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
17 Hb_003095_070 0.2211024607 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
18 Hb_113635_010 0.2249469936 - - -
19 Hb_039946_010 0.2285834536 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
20 Hb_004064_020 0.2285932709 - - hypothetical protein M569_06853, partial [Genlisea aurea]

Gene co-expression network

sample Hb_027346_020 Hb_027346_020 Hb_159352_010 Hb_159352_010 Hb_027346_020--Hb_159352_010 Hb_000720_190 Hb_000720_190 Hb_027346_020--Hb_000720_190 Hb_008864_060 Hb_008864_060 Hb_027346_020--Hb_008864_060 Hb_000450_020 Hb_000450_020 Hb_027346_020--Hb_000450_020 Hb_001276_060 Hb_001276_060 Hb_027346_020--Hb_001276_060 Hb_002326_170 Hb_002326_170 Hb_027346_020--Hb_002326_170 Hb_023051_020 Hb_023051_020 Hb_159352_010--Hb_023051_020 Hb_159352_010--Hb_000720_190 Hb_001373_100 Hb_001373_100 Hb_159352_010--Hb_001373_100 Hb_003226_240 Hb_003226_240 Hb_159352_010--Hb_003226_240 Hb_105602_020 Hb_105602_020 Hb_159352_010--Hb_105602_020 Hb_108528_010 Hb_108528_010 Hb_000720_190--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_000720_190--Hb_179520_010 Hb_003052_210 Hb_003052_210 Hb_000720_190--Hb_003052_210 Hb_001959_260 Hb_001959_260 Hb_000720_190--Hb_001959_260 Hb_000250_010 Hb_000250_010 Hb_008864_060--Hb_000250_010 Hb_008864_060--Hb_001959_260 Hb_011671_400 Hb_011671_400 Hb_008864_060--Hb_011671_400 Hb_008864_060--Hb_001276_060 Hb_002099_050 Hb_002099_050 Hb_008864_060--Hb_002099_050 Hb_003211_050 Hb_003211_050 Hb_008864_060--Hb_003211_050 Hb_001348_230 Hb_001348_230 Hb_000450_020--Hb_001348_230 Hb_091433_040 Hb_091433_040 Hb_000450_020--Hb_091433_040 Hb_001143_070 Hb_001143_070 Hb_000450_020--Hb_001143_070 Hb_000103_030 Hb_000103_030 Hb_000450_020--Hb_000103_030 Hb_012053_040 Hb_012053_040 Hb_000450_020--Hb_012053_040 Hb_003095_070 Hb_003095_070 Hb_001276_060--Hb_003095_070 Hb_001276_060--Hb_011671_400 Hb_001276_060--Hb_003211_050 Hb_005000_160 Hb_005000_160 Hb_001276_060--Hb_005000_160 Hb_000788_080 Hb_000788_080 Hb_001276_060--Hb_000788_080 Hb_009838_040 Hb_009838_040 Hb_001276_060--Hb_009838_040 Hb_002045_200 Hb_002045_200 Hb_002326_170--Hb_002045_200 Hb_001425_050 Hb_001425_050 Hb_002326_170--Hb_001425_050 Hb_002326_170--Hb_001276_060 Hb_002326_170--Hb_008864_060 Hb_001425_070 Hb_001425_070 Hb_002326_170--Hb_001425_070 Hb_001902_120 Hb_001902_120 Hb_002326_170--Hb_001902_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.566139 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.90266 2.51668 1.91579 0.472552 0

CAGE analysis