Hb_027357_010

Information

Type -
Description -
Location Contig27357: 11559-15671
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027357_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_013420_020 0.1242141625 - - conserved hypothetical protein [Ricinus communis]
3 Hb_156746_010 0.126722838 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
4 Hb_012163_050 0.135148645 - - ATPase subunit [Medicago truncatula]
5 Hb_041813_030 0.1391574896 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
6 Hb_171685_040 0.1404006954 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
7 Hb_013420_010 0.1435807702 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006040_030 0.1449746377 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
9 Hb_013420_090 0.1493249091 - - BnaCnng13090D [Brassica napus]
10 Hb_042463_070 0.1530873677 - - 60S ribosomal protein L16, putative [Ricinus communis]
11 Hb_171685_060 0.1613710566 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
12 Hb_042463_030 0.1636310413 - - unknown [Lotus japonicus]
13 Hb_013420_050 0.1648883342 - - hypothetical protein (mitochondrion) [Vicia faba]
14 Hb_102602_030 0.165863536 - - hypothetical protein (mitochondrion) [Vicia faba]
15 Hb_006040_020 0.1717975094 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
16 Hb_002482_050 0.1751855896 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
17 Hb_042463_020 0.1759378481 - - conserved hypothetical protein [Ricinus communis]
18 Hb_021374_020 0.1803298487 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
19 Hb_000879_260 0.1813113473 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
20 Hb_062192_030 0.1813315299 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_027357_010 Hb_027357_010 Hb_013420_020 Hb_013420_020 Hb_027357_010--Hb_013420_020 Hb_156746_010 Hb_156746_010 Hb_027357_010--Hb_156746_010 Hb_012163_050 Hb_012163_050 Hb_027357_010--Hb_012163_050 Hb_041813_030 Hb_041813_030 Hb_027357_010--Hb_041813_030 Hb_171685_040 Hb_171685_040 Hb_027357_010--Hb_171685_040 Hb_013420_010 Hb_013420_010 Hb_027357_010--Hb_013420_010 Hb_013420_020--Hb_012163_050 Hb_013420_020--Hb_156746_010 Hb_006040_030 Hb_006040_030 Hb_013420_020--Hb_006040_030 Hb_171685_060 Hb_171685_060 Hb_013420_020--Hb_171685_060 Hb_171685_080 Hb_171685_080 Hb_013420_020--Hb_171685_080 Hb_156746_010--Hb_006040_030 Hb_042463_070 Hb_042463_070 Hb_156746_010--Hb_042463_070 Hb_156746_010--Hb_041813_030 Hb_013420_050 Hb_013420_050 Hb_156746_010--Hb_013420_050 Hb_156746_010--Hb_012163_050 Hb_012163_050--Hb_171685_060 Hb_042463_030 Hb_042463_030 Hb_012163_050--Hb_042463_030 Hb_012163_050--Hb_006040_030 Hb_012163_050--Hb_042463_070 Hb_041813_030--Hb_042463_070 Hb_077242_020 Hb_077242_020 Hb_041813_030--Hb_077242_020 Hb_041813_030--Hb_006040_030 Hb_062192_030 Hb_062192_030 Hb_041813_030--Hb_062192_030 Hb_041813_030--Hb_013420_050 Hb_006040_050 Hb_006040_050 Hb_171685_040--Hb_006040_050 Hb_102602_030 Hb_102602_030 Hb_171685_040--Hb_102602_030 Hb_171685_040--Hb_013420_010 Hb_072212_020 Hb_072212_020 Hb_171685_040--Hb_072212_020 Hb_005742_010 Hb_005742_010 Hb_171685_040--Hb_005742_010 Hb_042463_020 Hb_042463_020 Hb_013420_010--Hb_042463_020 Hb_013420_010--Hb_072212_020 Hb_034168_070 Hb_034168_070 Hb_013420_010--Hb_034168_070 Hb_013420_010--Hb_012163_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0123217 0 0.00368014 0 0.00456564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.017098 0.00705712 0.305226

CAGE analysis