Hb_027380_040

Information

Type -
Description -
Location Contig27380: 17764-19816
Sequence    

Annotation

kegg
ID cic:CICLE_v10017932mg
description hypothetical protein
nr
ID KJB69861.1
description hypothetical protein B456_011G046500, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2UNZ3
description Gossypium raimondii chromosome 11, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_011G046500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28584: 17778-19206 , PASA_asmbl_28585: 17236-19707 , PASA_asmbl_28586: 20226-23814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_040 0.0 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
2 Hb_005298_060 0.1285457987 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Malus domestica]
3 Hb_004286_040 0.1346244319 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
4 Hb_006120_200 0.1348896006 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
5 Hb_073973_170 0.1413024892 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
6 Hb_004137_030 0.1424377543 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002619_010 0.1437365209 - - -
8 Hb_002681_040 0.1473146854 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
9 Hb_001269_150 0.1564220305 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
10 Hb_005271_170 0.1640680381 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
11 Hb_000714_020 0.1665923767 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
12 Hb_019516_040 0.1688222496 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
13 Hb_000590_090 0.1688403391 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_178968_150 0.1692791605 - - zinc finger protein, putative [Ricinus communis]
15 Hb_001493_100 0.1693391279 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
16 Hb_007741_170 0.1697912246 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4-like [Jatropha curcas]
17 Hb_002078_430 0.1702448268 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
18 Hb_001386_130 0.170289031 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
19 Hb_000680_150 0.1705325106 - - PREDICTED: protein STU1-like [Jatropha curcas]
20 Hb_100414_010 0.1731732873 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl pyrophosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_027380_040 Hb_027380_040 Hb_005298_060 Hb_005298_060 Hb_027380_040--Hb_005298_060 Hb_004286_040 Hb_004286_040 Hb_027380_040--Hb_004286_040 Hb_006120_200 Hb_006120_200 Hb_027380_040--Hb_006120_200 Hb_073973_170 Hb_073973_170 Hb_027380_040--Hb_073973_170 Hb_004137_030 Hb_004137_030 Hb_027380_040--Hb_004137_030 Hb_002619_010 Hb_002619_010 Hb_027380_040--Hb_002619_010 Hb_007741_170 Hb_007741_170 Hb_005298_060--Hb_007741_170 Hb_000138_190 Hb_000138_190 Hb_005298_060--Hb_000138_190 Hb_004738_090 Hb_004738_090 Hb_005298_060--Hb_004738_090 Hb_178968_150 Hb_178968_150 Hb_005298_060--Hb_178968_150 Hb_001140_160 Hb_001140_160 Hb_005298_060--Hb_001140_160 Hb_004286_040--Hb_006120_200 Hb_000120_240 Hb_000120_240 Hb_004286_040--Hb_000120_240 Hb_000956_130 Hb_000956_130 Hb_004286_040--Hb_000956_130 Hb_002043_180 Hb_002043_180 Hb_004286_040--Hb_002043_180 Hb_002027_220 Hb_002027_220 Hb_004286_040--Hb_002027_220 Hb_000762_020 Hb_000762_020 Hb_006120_200--Hb_000762_020 Hb_000481_020 Hb_000481_020 Hb_006120_200--Hb_000481_020 Hb_001315_020 Hb_001315_020 Hb_006120_200--Hb_001315_020 Hb_006070_010 Hb_006070_010 Hb_006120_200--Hb_006070_010 Hb_002027_300 Hb_002027_300 Hb_006120_200--Hb_002027_300 Hb_000957_040 Hb_000957_040 Hb_006120_200--Hb_000957_040 Hb_073973_170--Hb_004137_030 Hb_073973_170--Hb_002619_010 Hb_001956_050 Hb_001956_050 Hb_073973_170--Hb_001956_050 Hb_000714_020 Hb_000714_020 Hb_073973_170--Hb_000714_020 Hb_001405_050 Hb_001405_050 Hb_073973_170--Hb_001405_050 Hb_004137_030--Hb_002619_010 Hb_001623_370 Hb_001623_370 Hb_004137_030--Hb_001623_370 Hb_004137_030--Hb_000714_020 Hb_004994_310 Hb_004994_310 Hb_004137_030--Hb_004994_310 Hb_004137_030--Hb_001956_050 Hb_002619_010--Hb_000714_020 Hb_004374_010 Hb_004374_010 Hb_002619_010--Hb_004374_010 Hb_005741_020 Hb_005741_020 Hb_002619_010--Hb_005741_020 Hb_000590_090 Hb_000590_090 Hb_002619_010--Hb_000590_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.7877 5.72526 12.1048 8.11303 19.3551 29.357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.3788 21.9217 13.3787 2.90207 3.30484

CAGE analysis