Hb_027380_050

Information

Type -
Description -
Location Contig27380: 20224-32542
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa018240mg
description hypothetical protein
nr
ID XP_012072150.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
swissprot
ID Q3E6Q1
description Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
trembl
ID M5X8D3
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018240mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at1g11290-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28586: 20226-23814 , PASA_asmbl_28587: 21607-21864 , PASA_asmbl_28588: 21938-22232
cDNA
(Sanger)
(ID:Location)		 001_B09.ab1: 21684-23814

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
2 Hb_001245_100 0.0610512074 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
3 Hb_058999_020 0.0659566845 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
4 Hb_005779_060 0.0681727278 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
5 Hb_000684_470 0.0687371607 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
6 Hb_000152_500 0.0690954601 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
7 Hb_001030_020 0.0694558609 - - Poly(A) polymerase alpha, putative [Ricinus communis]
8 Hb_004116_190 0.0706283831 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
9 Hb_000373_070 0.0707804268 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
10 Hb_005846_040 0.0709182107 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
11 Hb_001766_060 0.0716562365 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000676_180 0.0717426712 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
13 Hb_005725_250 0.0721761788 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
14 Hb_003151_040 0.0726839952 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
15 Hb_002046_180 0.0732373474 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
16 Hb_001163_050 0.0742440903 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
17 Hb_001828_060 0.0758842021 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
18 Hb_001470_030 0.0759544924 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
19 Hb_000656_240 0.0761738491 - - proteasome subunit alpha type, putative [Ricinus communis]
20 Hb_001766_110 0.0787751559 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]

Gene co-expression network

sample Hb_027380_050 Hb_027380_050 Hb_001245_100 Hb_001245_100 Hb_027380_050--Hb_001245_100 Hb_058999_020 Hb_058999_020 Hb_027380_050--Hb_058999_020 Hb_005779_060 Hb_005779_060 Hb_027380_050--Hb_005779_060 Hb_000684_470 Hb_000684_470 Hb_027380_050--Hb_000684_470 Hb_000152_500 Hb_000152_500 Hb_027380_050--Hb_000152_500 Hb_001030_020 Hb_001030_020 Hb_027380_050--Hb_001030_020 Hb_001766_060 Hb_001766_060 Hb_001245_100--Hb_001766_060 Hb_000667_070 Hb_000667_070 Hb_001245_100--Hb_000667_070 Hb_005846_040 Hb_005846_040 Hb_001245_100--Hb_005846_040 Hb_003151_040 Hb_003151_040 Hb_001245_100--Hb_003151_040 Hb_002046_180 Hb_002046_180 Hb_001245_100--Hb_002046_180 Hb_000757_060 Hb_000757_060 Hb_058999_020--Hb_000757_060 Hb_058999_020--Hb_005779_060 Hb_000227_080 Hb_000227_080 Hb_058999_020--Hb_000227_080 Hb_000215_110 Hb_000215_110 Hb_058999_020--Hb_000215_110 Hb_000465_460 Hb_000465_460 Hb_058999_020--Hb_000465_460 Hb_002044_080 Hb_002044_080 Hb_058999_020--Hb_002044_080 Hb_000876_070 Hb_000876_070 Hb_005779_060--Hb_000876_070 Hb_000016_250 Hb_000016_250 Hb_005779_060--Hb_000016_250 Hb_005779_060--Hb_002046_180 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_002110_150 Hb_002110_150 Hb_005779_060--Hb_002110_150 Hb_005116_160 Hb_005116_160 Hb_000684_470--Hb_005116_160 Hb_000684_470--Hb_005779_060 Hb_156279_020 Hb_156279_020 Hb_000684_470--Hb_156279_020 Hb_000684_470--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_000684_470--Hb_005463_100 Hb_009767_110 Hb_009767_110 Hb_000684_470--Hb_009767_110 Hb_000152_500--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_000152_500--Hb_000373_070 Hb_001470_030 Hb_001470_030 Hb_000152_500--Hb_001470_030 Hb_001133_120 Hb_001133_120 Hb_000152_500--Hb_001133_120 Hb_006059_050 Hb_006059_050 Hb_000152_500--Hb_006059_050 Hb_001030_020--Hb_001470_030 Hb_010423_030 Hb_010423_030 Hb_001030_020--Hb_010423_030 Hb_001030_020--Hb_001245_100 Hb_001163_050 Hb_001163_050 Hb_001030_020--Hb_001163_050 Hb_001157_040 Hb_001157_040 Hb_001030_020--Hb_001157_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.72082 7.8697 6.4676 4.6345 6.6356 7.31691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3357 14.926 9.3783 7.23025 6.51379

CAGE analysis