Hb_027380_140

Information

Type -
Description -
Location Contig27380: 120627-128938
Sequence    

Annotation

kegg
ID rcu:RCOM_0485200
description hypothetical protein
nr
ID XP_012072158.1
description PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
swissprot
ID Q5M8S7
description NIPA-like protein OS=Xenopus tropicalis GN=zc3hc1 PE=2 SV=1
trembl
ID A0A067L1M7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04652 PE=4 SV=1
Gene Ontology
ID GO:0005634
description iap-like protein 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28597: 120747-121431 , PASA_asmbl_28599: 128175-128834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_140 0.0 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
2 Hb_002329_040 0.0492783714 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
3 Hb_008024_030 0.0495681712 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
4 Hb_012053_080 0.0597867044 - - AP-2 complex subunit alpha, putative [Ricinus communis]
5 Hb_007062_020 0.0600550839 - - gcn4-complementing protein, putative [Ricinus communis]
6 Hb_000470_070 0.0606384453 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
7 Hb_000574_440 0.0634967924 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
8 Hb_012395_140 0.0638946398 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
9 Hb_004453_110 0.0641718464 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
10 Hb_000261_030 0.0658974437 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
11 Hb_000785_040 0.0666325797 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
12 Hb_009296_010 0.0669169875 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
13 Hb_002174_020 0.0670854307 - - ring finger protein, putative [Ricinus communis]
14 Hb_002078_100 0.0671811716 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
15 Hb_000914_120 0.0673761737 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
16 Hb_000035_410 0.068307777 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
17 Hb_000429_220 0.0694107747 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
18 Hb_001379_110 0.0702739363 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
19 Hb_000084_250 0.0705858062 - - nucleolar phosphoprotein, putative [Ricinus communis]
20 Hb_003044_020 0.0706767736 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]

Gene co-expression network

sample Hb_027380_140 Hb_027380_140 Hb_002329_040 Hb_002329_040 Hb_027380_140--Hb_002329_040 Hb_008024_030 Hb_008024_030 Hb_027380_140--Hb_008024_030 Hb_012053_080 Hb_012053_080 Hb_027380_140--Hb_012053_080 Hb_007062_020 Hb_007062_020 Hb_027380_140--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_027380_140--Hb_000470_070 Hb_000574_440 Hb_000574_440 Hb_027380_140--Hb_000574_440 Hb_002107_070 Hb_002107_070 Hb_002329_040--Hb_002107_070 Hb_000740_100 Hb_000740_100 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_000183_020 Hb_000183_020 Hb_002329_040--Hb_000183_020 Hb_004920_090 Hb_004920_090 Hb_008024_030--Hb_004920_090 Hb_001623_480 Hb_001623_480 Hb_008024_030--Hb_001623_480 Hb_008024_030--Hb_000740_100 Hb_000671_070 Hb_000671_070 Hb_008024_030--Hb_000671_070 Hb_008024_030--Hb_012395_140 Hb_001935_110 Hb_001935_110 Hb_012053_080--Hb_001935_110 Hb_160459_040 Hb_160459_040 Hb_012053_080--Hb_160459_040 Hb_000035_170 Hb_000035_170 Hb_012053_080--Hb_000035_170 Hb_009296_010 Hb_009296_010 Hb_012053_080--Hb_009296_010 Hb_025477_040 Hb_025477_040 Hb_012053_080--Hb_025477_040 Hb_000785_040 Hb_000785_040 Hb_007062_020--Hb_000785_040 Hb_001269_210 Hb_001269_210 Hb_007062_020--Hb_001269_210 Hb_007062_020--Hb_000470_070 Hb_007062_020--Hb_009296_010 Hb_007062_020--Hb_012053_080 Hb_002078_100 Hb_002078_100 Hb_000470_070--Hb_002078_100 Hb_174821_010 Hb_174821_010 Hb_000470_070--Hb_174821_010 Hb_019654_040 Hb_019654_040 Hb_000470_070--Hb_019654_040 Hb_000648_100 Hb_000648_100 Hb_000470_070--Hb_000648_100 Hb_000470_070--Hb_009296_010 Hb_001617_060 Hb_001617_060 Hb_000470_070--Hb_001617_060 Hb_009503_030 Hb_009503_030 Hb_000574_440--Hb_009503_030 Hb_000084_250 Hb_000084_250 Hb_000574_440--Hb_000084_250 Hb_002221_050 Hb_002221_050 Hb_000574_440--Hb_002221_050 Hb_006831_110 Hb_006831_110 Hb_000574_440--Hb_006831_110 Hb_000768_070 Hb_000768_070 Hb_000574_440--Hb_000768_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.93609 8.98545 6.86213 6.40876 11.965 12.2648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.67094 3.65133 6.88559 8.0162 8.10464

CAGE analysis