Hb_027380_180

Information

Type -
Description -
Location Contig27380: 148362-165557
Sequence    

Annotation

kegg
ID cit:102621061
description putative hydrolase C777.06c-like
nr
ID XP_012072172.1
description PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
swissprot
ID O74545
description Putative hydrolase C777.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC777.06c PE=4 SV=1
trembl
ID A0A067KSN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04656 PE=4 SV=1
Gene Ontology
ID GO:0005634
description hydrolase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28602: 151555-153026 , PASA_asmbl_28603: 153505-155787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_180 0.0 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
2 Hb_000061_130 0.0688218308 - - rotamase, putative [Ricinus communis]
3 Hb_000193_120 0.0971444208 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
4 Hb_026048_070 0.0976507655 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
5 Hb_000103_010 0.1055140593 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
6 Hb_001085_270 0.107861969 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
7 Hb_005474_060 0.1096692269 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
8 Hb_006478_150 0.1125807406 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
9 Hb_000567_410 0.1128038544 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
10 Hb_001085_120 0.1143467209 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
11 Hb_004567_120 0.1144617369 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
12 Hb_003185_050 0.114663345 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
13 Hb_000181_300 0.1155283785 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
14 Hb_000905_180 0.1163444842 - - 60S ribosomal protein L31A [Hevea brasiliensis]
15 Hb_000398_040 0.1166804431 - - Auxin response factor, putative [Ricinus communis]
16 Hb_001016_090 0.1168183667 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
17 Hb_000224_140 0.1179996244 - - ribonuclease z, chloroplast, putative [Ricinus communis]
18 Hb_011644_030 0.1186787231 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
19 Hb_180074_010 0.119593806 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
20 Hb_001775_110 0.120398185 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]

Gene co-expression network

sample Hb_027380_180 Hb_027380_180 Hb_000061_130 Hb_000061_130 Hb_027380_180--Hb_000061_130 Hb_000193_120 Hb_000193_120 Hb_027380_180--Hb_000193_120 Hb_026048_070 Hb_026048_070 Hb_027380_180--Hb_026048_070 Hb_000103_010 Hb_000103_010 Hb_027380_180--Hb_000103_010 Hb_001085_270 Hb_001085_270 Hb_027380_180--Hb_001085_270 Hb_005474_060 Hb_005474_060 Hb_027380_180--Hb_005474_060 Hb_000061_130--Hb_001085_270 Hb_000061_130--Hb_000193_120 Hb_001240_020 Hb_001240_020 Hb_000061_130--Hb_001240_020 Hb_000567_410 Hb_000567_410 Hb_000061_130--Hb_000567_410 Hb_002909_130 Hb_002909_130 Hb_000061_130--Hb_002909_130 Hb_000181_300 Hb_000181_300 Hb_000193_120--Hb_000181_300 Hb_000193_120--Hb_000103_010 Hb_000012_100 Hb_000012_100 Hb_000193_120--Hb_000012_100 Hb_004156_040 Hb_004156_040 Hb_000193_120--Hb_004156_040 Hb_001634_040 Hb_001634_040 Hb_000193_120--Hb_001634_040 Hb_001016_090 Hb_001016_090 Hb_000193_120--Hb_001016_090 Hb_011644_030 Hb_011644_030 Hb_026048_070--Hb_011644_030 Hb_003623_050 Hb_003623_050 Hb_026048_070--Hb_003623_050 Hb_026048_070--Hb_001016_090 Hb_003053_030 Hb_003053_030 Hb_026048_070--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_026048_070--Hb_148200_010 Hb_001279_360 Hb_001279_360 Hb_026048_070--Hb_001279_360 Hb_001085_120 Hb_001085_120 Hb_000103_010--Hb_001085_120 Hb_000103_010--Hb_000181_300 Hb_004375_140 Hb_004375_140 Hb_000103_010--Hb_004375_140 Hb_003077_040 Hb_003077_040 Hb_000103_010--Hb_003077_040 Hb_005181_030 Hb_005181_030 Hb_000103_010--Hb_005181_030 Hb_001369_170 Hb_001369_170 Hb_001085_270--Hb_001369_170 Hb_001085_270--Hb_000567_410 Hb_001085_270--Hb_002909_130 Hb_172221_010 Hb_172221_010 Hb_001085_270--Hb_172221_010 Hb_001085_270--Hb_000193_120 Hb_003994_040 Hb_003994_040 Hb_005474_060--Hb_003994_040 Hb_000905_180 Hb_000905_180 Hb_005474_060--Hb_000905_180 Hb_002687_170 Hb_002687_170 Hb_005474_060--Hb_002687_170 Hb_005474_060--Hb_011644_030 Hb_005474_060--Hb_003053_030 Hb_005474_060--Hb_000181_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.798159 0.591552 1.052 0.4586 0.74319 1.36379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.00078 5.54093 3.2627 1.95827 1.30134

CAGE analysis