Hb_027380_190

Information

Type -
Description -
Location Contig27380: 171067-174841
Sequence    

Annotation

kegg
ID rcu:RCOM_0485450
description DNA binding protein, putative
nr
ID XP_012072173.1
description PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
swissprot
ID P93788
description Remorin OS=Solanum tuberosum PE=1 SV=1
trembl
ID A0A067L0I9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04658 PE=4 SV=1
Gene Ontology
ID GO:0005886
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28605: 173335-174134
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_190 0.0 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
2 Hb_152868_030 0.1290779258 - - abhydrolase domain containing, putative [Ricinus communis]
3 Hb_000172_280 0.1322698913 - - aspartate aminotransferase, putative [Ricinus communis]
4 Hb_001817_100 0.1428307924 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
5 Hb_000465_150 0.1430262486 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
6 Hb_000907_150 0.1446377847 - - hypothetical protein L484_004295 [Morus notabilis]
7 Hb_007590_090 0.1451621212 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
8 Hb_002486_080 0.1470104341 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
9 Hb_003025_030 0.1473114373 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_000648_050 0.1492970701 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
11 Hb_124315_010 0.150088636 - - PREDICTED: uncharacterized protein LOC105650413 [Jatropha curcas]
12 Hb_005015_110 0.1517177577 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
13 Hb_000175_470 0.1527664759 - - lactoylglutathione lyase, putative [Ricinus communis]
14 Hb_001510_020 0.1535473633 - - Diaminopimelate epimerase, putative [Ricinus communis]
15 Hb_002627_020 0.1552568221 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
16 Hb_011633_040 0.157672866 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
17 Hb_000339_020 0.1580508449 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
18 Hb_002170_020 0.1619522039 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
19 Hb_029385_010 0.1631685012 - - CTP synthase family protein [Populus trichocarpa]
20 Hb_028872_150 0.1634617112 - - PREDICTED: uncharacterized protein LOC105137493 [Populus euphratica]

Gene co-expression network

sample Hb_027380_190 Hb_027380_190 Hb_152868_030 Hb_152868_030 Hb_027380_190--Hb_152868_030 Hb_000172_280 Hb_000172_280 Hb_027380_190--Hb_000172_280 Hb_001817_100 Hb_001817_100 Hb_027380_190--Hb_001817_100 Hb_000465_150 Hb_000465_150 Hb_027380_190--Hb_000465_150 Hb_000907_150 Hb_000907_150 Hb_027380_190--Hb_000907_150 Hb_007590_090 Hb_007590_090 Hb_027380_190--Hb_007590_090 Hb_005015_110 Hb_005015_110 Hb_152868_030--Hb_005015_110 Hb_002170_020 Hb_002170_020 Hb_152868_030--Hb_002170_020 Hb_003025_030 Hb_003025_030 Hb_152868_030--Hb_003025_030 Hb_152868_030--Hb_000465_150 Hb_011633_040 Hb_011633_040 Hb_152868_030--Hb_011633_040 Hb_000220_110 Hb_000220_110 Hb_000172_280--Hb_000220_110 Hb_002486_080 Hb_002486_080 Hb_000172_280--Hb_002486_080 Hb_124315_010 Hb_124315_010 Hb_000172_280--Hb_124315_010 Hb_000172_280--Hb_000465_150 Hb_000172_280--Hb_000907_150 Hb_001148_090 Hb_001148_090 Hb_000172_280--Hb_001148_090 Hb_001817_100--Hb_007590_090 Hb_002217_100 Hb_002217_100 Hb_001817_100--Hb_002217_100 Hb_002615_030 Hb_002615_030 Hb_001817_100--Hb_002615_030 Hb_000023_310 Hb_000023_310 Hb_001817_100--Hb_000023_310 Hb_002007_320 Hb_002007_320 Hb_001817_100--Hb_002007_320 Hb_001998_200 Hb_001998_200 Hb_001817_100--Hb_001998_200 Hb_007416_110 Hb_007416_110 Hb_000465_150--Hb_007416_110 Hb_000465_150--Hb_005015_110 Hb_000465_150--Hb_002486_080 Hb_000465_150--Hb_003025_030 Hb_002232_430 Hb_002232_430 Hb_000465_150--Hb_002232_430 Hb_001493_150 Hb_001493_150 Hb_000465_150--Hb_001493_150 Hb_000907_150--Hb_000220_110 Hb_008749_020 Hb_008749_020 Hb_000907_150--Hb_008749_020 Hb_000907_150--Hb_000465_150 Hb_003227_010 Hb_003227_010 Hb_000907_150--Hb_003227_010 Hb_001616_070 Hb_001616_070 Hb_000907_150--Hb_001616_070 Hb_007590_090--Hb_002615_030 Hb_004007_110 Hb_004007_110 Hb_007590_090--Hb_004007_110 Hb_007590_090--Hb_001998_200 Hb_000012_110 Hb_000012_110 Hb_007590_090--Hb_000012_110 Hb_007590_090--Hb_002217_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128779 1.42342 2.70366 3.18321 0.0474306 0.269609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.12723 1.47824 1.12184 4.538 1.98578

CAGE analysis