Hb_027380_200

Information

Type transcription factor
Description TF Family: ARF
Location Contig27380: 177016-184253
Sequence    

Annotation

kegg
ID tcc:TCM_029410
description Auxin response factor 6 isoform 1
nr
ID XP_012072177.1
description PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
swissprot
ID Q6H6V4
description Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1
trembl
ID A0A067KP61
description Auxin response factor OS=Jatropha curcas GN=JCGZ_04659 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 6-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28607: 176817-184131 , PASA_asmbl_28608: 179627-179786 , PASA_asmbl_28609: 176433-177059
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_200 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
2 Hb_012317_020 0.1572561993 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
3 Hb_001726_110 0.1617593046 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
4 Hb_003038_140 0.1645124967 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
5 Hb_000318_200 0.1684125087 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
6 Hb_006501_160 0.1728464852 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
7 Hb_008790_020 0.1756500848 - - PREDICTED: uncharacterized protein LOC105638122 [Jatropha curcas]
8 Hb_073171_100 0.1806973087 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
9 Hb_001621_010 0.1851717765 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
10 Hb_000792_040 0.1855863084 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
11 Hb_000061_120 0.1864075926 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
12 Hb_000302_200 0.1884575268 - - ornithine cyclodeaminase, putative [Ricinus communis]
13 Hb_003253_050 0.1892775852 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
14 Hb_001828_020 0.1906591989 - - hypothetical protein CISIN_1g010132mg [Citrus sinensis]
15 Hb_006573_300 0.1998112788 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000002_270 0.2025316189 - - hypothetical protein VITISV_043897 [Vitis vinifera]
17 Hb_119494_010 0.2034265653 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
18 Hb_116349_040 0.2046315721 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
19 Hb_006453_010 0.2057620477 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
20 Hb_041201_010 0.2070052364 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]

Gene co-expression network

sample Hb_027380_200 Hb_027380_200 Hb_012317_020 Hb_012317_020 Hb_027380_200--Hb_012317_020 Hb_001726_110 Hb_001726_110 Hb_027380_200--Hb_001726_110 Hb_003038_140 Hb_003038_140 Hb_027380_200--Hb_003038_140 Hb_000318_200 Hb_000318_200 Hb_027380_200--Hb_000318_200 Hb_006501_160 Hb_006501_160 Hb_027380_200--Hb_006501_160 Hb_008790_020 Hb_008790_020 Hb_027380_200--Hb_008790_020 Hb_000699_230 Hb_000699_230 Hb_012317_020--Hb_000699_230 Hb_000983_080 Hb_000983_080 Hb_012317_020--Hb_000983_080 Hb_012317_020--Hb_001726_110 Hb_000061_120 Hb_000061_120 Hb_012317_020--Hb_000061_120 Hb_000625_090 Hb_000625_090 Hb_012317_020--Hb_000625_090 Hb_012317_020--Hb_003038_140 Hb_005489_140 Hb_005489_140 Hb_001726_110--Hb_005489_140 Hb_001726_110--Hb_003038_140 Hb_000144_120 Hb_000144_120 Hb_001726_110--Hb_000144_120 Hb_082741_010 Hb_082741_010 Hb_001726_110--Hb_082741_010 Hb_001019_050 Hb_001019_050 Hb_001726_110--Hb_001019_050 Hb_007441_280 Hb_007441_280 Hb_001726_110--Hb_007441_280 Hb_001369_250 Hb_001369_250 Hb_003038_140--Hb_001369_250 Hb_001623_160 Hb_001623_160 Hb_003038_140--Hb_001623_160 Hb_001332_040 Hb_001332_040 Hb_003038_140--Hb_001332_040 Hb_002675_140 Hb_002675_140 Hb_003038_140--Hb_002675_140 Hb_010174_150 Hb_010174_150 Hb_003038_140--Hb_010174_150 Hb_000417_320 Hb_000417_320 Hb_000318_200--Hb_000417_320 Hb_000796_250 Hb_000796_250 Hb_000318_200--Hb_000796_250 Hb_000120_390 Hb_000120_390 Hb_000318_200--Hb_000120_390 Hb_008147_070 Hb_008147_070 Hb_000318_200--Hb_008147_070 Hb_119494_010 Hb_119494_010 Hb_000318_200--Hb_119494_010 Hb_073171_100 Hb_073171_100 Hb_006501_160--Hb_073171_100 Hb_000347_450 Hb_000347_450 Hb_006501_160--Hb_000347_450 Hb_000302_200 Hb_000302_200 Hb_006501_160--Hb_000302_200 Hb_028960_030 Hb_028960_030 Hb_006501_160--Hb_028960_030 Hb_001269_380 Hb_001269_380 Hb_006501_160--Hb_001269_380 Hb_000997_180 Hb_000997_180 Hb_006501_160--Hb_000997_180 Hb_008790_020--Hb_005489_140 Hb_008790_020--Hb_001726_110 Hb_162150_010 Hb_162150_010 Hb_008790_020--Hb_162150_010 Hb_008790_020--Hb_001019_050 Hb_025336_020 Hb_025336_020 Hb_008790_020--Hb_025336_020 Hb_049436_010 Hb_049436_010 Hb_008790_020--Hb_049436_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.9076 34.3232 7.37814 26.1583 2.83504 6.95263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.267 10.5475 9.74936 52.4985 16.9247

CAGE analysis