Hb_027380_210

Information

Type -
Description -
Location Contig27380: 211673-219215
Sequence    

Annotation

kegg
ID rcu:RCOM_1288380
description hypothetical protein
nr
ID XP_012072179.1
description PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SYI2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1288380 PE=4 SV=1
Gene Ontology
ID GO:0009507
description plastid transcriptionally active 12 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28612: 211682-219667 , PASA_asmbl_28613: 211682-217122 , PASA_asmbl_28616: 214361-214544
cDNA
(Sanger)
(ID:Location)		 003_F20.ab1: 217809-219664

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_210 0.0 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
2 Hb_161549_010 0.0715974726 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000609_110 0.0716547928 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
4 Hb_000453_230 0.0810525292 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_005694_130 0.0991927224 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
6 Hb_000836_540 0.0999809903 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
7 Hb_000212_300 0.1015010972 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
8 Hb_002686_410 0.1028038886 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
9 Hb_001277_340 0.1082176322 - - aldo/keto reductase, putative [Ricinus communis]
10 Hb_001369_030 0.1087542711 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
11 Hb_000805_200 0.1091052027 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
12 Hb_012305_140 0.110099902 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
13 Hb_003925_060 0.1126056973 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
14 Hb_005873_020 0.1138018553 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
15 Hb_005885_030 0.1160990702 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_010775_010 0.1174319016 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
17 Hb_005941_020 0.1180157574 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
18 Hb_009178_010 0.1190061112 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
19 Hb_001624_040 0.119936971 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
20 Hb_001488_210 0.1209615261 - - PREDICTED: protein RIK [Jatropha curcas]

Gene co-expression network

sample Hb_027380_210 Hb_027380_210 Hb_161549_010 Hb_161549_010 Hb_027380_210--Hb_161549_010 Hb_000609_110 Hb_000609_110 Hb_027380_210--Hb_000609_110 Hb_000453_230 Hb_000453_230 Hb_027380_210--Hb_000453_230 Hb_005694_130 Hb_005694_130 Hb_027380_210--Hb_005694_130 Hb_000836_540 Hb_000836_540 Hb_027380_210--Hb_000836_540 Hb_000212_300 Hb_000212_300 Hb_027380_210--Hb_000212_300 Hb_161549_010--Hb_000453_230 Hb_161549_010--Hb_000609_110 Hb_005941_020 Hb_005941_020 Hb_161549_010--Hb_005941_020 Hb_000805_200 Hb_000805_200 Hb_161549_010--Hb_000805_200 Hb_161549_010--Hb_000836_540 Hb_000609_110--Hb_005694_130 Hb_000609_110--Hb_000836_540 Hb_003001_070 Hb_003001_070 Hb_000609_110--Hb_003001_070 Hb_003992_180 Hb_003992_180 Hb_000609_110--Hb_003992_180 Hb_000609_110--Hb_000805_200 Hb_004837_020 Hb_004837_020 Hb_000453_230--Hb_004837_020 Hb_002447_050 Hb_002447_050 Hb_000453_230--Hb_002447_050 Hb_000665_150 Hb_000665_150 Hb_000453_230--Hb_000665_150 Hb_000453_230--Hb_000836_540 Hb_005694_130--Hb_003001_070 Hb_012305_140 Hb_012305_140 Hb_005694_130--Hb_012305_140 Hb_005694_130--Hb_003992_180 Hb_000454_140 Hb_000454_140 Hb_005694_130--Hb_000454_140 Hb_005694_130--Hb_000805_200 Hb_000836_540--Hb_005694_130 Hb_001369_030 Hb_001369_030 Hb_000836_540--Hb_001369_030 Hb_003925_060 Hb_003925_060 Hb_000836_540--Hb_003925_060 Hb_002056_100 Hb_002056_100 Hb_000836_540--Hb_002056_100 Hb_000212_300--Hb_001369_030 Hb_000062_360 Hb_000062_360 Hb_000212_300--Hb_000062_360 Hb_011671_110 Hb_011671_110 Hb_000212_300--Hb_011671_110 Hb_015026_020 Hb_015026_020 Hb_000212_300--Hb_015026_020 Hb_000212_300--Hb_005941_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8638 49.6067 61.3881 20.7421 15.1351 15.1953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.05114 3.69406 6.55221 15.5747 39.2624

CAGE analysis