Hb_027380_240

Information

Type -
Description -
Location Contig27380: 237813-239750
Sequence    

Annotation

kegg
ID rcu:RCOM_1288510
description triacylglycerol lipase, putative
nr
ID XP_012072182.1
description PREDICTED: phospholipase A1-Igamma1, chloroplastic [Jatropha curcas]
swissprot
ID Q3EBR6
description Phospholipase A1-Igamma2, chloroplastic OS=Arabidopsis thaliana GN=At2g30550 PE=1 SV=2
trembl
ID A0A067L0J4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04663 PE=4 SV=1
Gene Ontology
ID GO:0006629
description phospholipase a1- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_240 0.0 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic [Jatropha curcas]
2 Hb_004143_030 0.1915121648 - - PREDICTED: chromosome-associated kinesin KIF4B [Jatropha curcas]
3 Hb_162094_010 0.2016645725 - - RNA polymerase alpha subunit [Hevea brasiliensis]
4 Hb_001338_160 0.2332758299 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]
5 Hb_001155_020 0.2379156447 - - Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
6 Hb_008206_070 0.2548457754 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
7 Hb_000049_220 0.2562420692 - - ammonium transporter, putative [Ricinus communis]
8 Hb_007504_030 0.2566329328 - - Rpl14, partial (chloroplast) [Schistostemon retusum]
9 Hb_071126_010 0.2581100507 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_007504_040 0.2672463369 - - hypothetical chloroplast RF2 [Fragaria iinumae]
11 Hb_003963_040 0.273032311 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
12 Hb_005399_050 0.2778961955 - - DNA-directed RNA polymerase subunit beta [Glycine soja]
13 Hb_001338_150 0.2815583891 - - hypothetical chloroplast RF1 [Dillenia indica]
14 Hb_000608_330 0.2843783754 - - Zeamatin precursor, putative [Ricinus communis]
15 Hb_004611_040 0.2921730304 - - PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_072212_010 0.2929915653 - - hypothetical chloroplast RF1 [Ficus sp. M. J. Moore 315]
17 Hb_000115_040 0.2937132098 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000571_130 0.2972324091 - - kinase, putative [Ricinus communis]
19 Hb_003693_060 0.2980843959 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
20 Hb_000627_010 0.2981419396 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]

Gene co-expression network

sample Hb_027380_240 Hb_027380_240 Hb_004143_030 Hb_004143_030 Hb_027380_240--Hb_004143_030 Hb_162094_010 Hb_162094_010 Hb_027380_240--Hb_162094_010 Hb_001338_160 Hb_001338_160 Hb_027380_240--Hb_001338_160 Hb_001155_020 Hb_001155_020 Hb_027380_240--Hb_001155_020 Hb_008206_070 Hb_008206_070 Hb_027380_240--Hb_008206_070 Hb_000049_220 Hb_000049_220 Hb_027380_240--Hb_000049_220 Hb_004143_030--Hb_000049_220 Hb_007504_030 Hb_007504_030 Hb_004143_030--Hb_007504_030 Hb_007317_170 Hb_007317_170 Hb_004143_030--Hb_007317_170 Hb_000603_270 Hb_000603_270 Hb_004143_030--Hb_000603_270 Hb_004738_060 Hb_004738_060 Hb_004143_030--Hb_004738_060 Hb_003963_040 Hb_003963_040 Hb_162094_010--Hb_003963_040 Hb_001338_150 Hb_001338_150 Hb_162094_010--Hb_001338_150 Hb_162094_010--Hb_001338_160 Hb_003032_090 Hb_003032_090 Hb_162094_010--Hb_003032_090 Hb_162094_010--Hb_001155_020 Hb_003693_060 Hb_003693_060 Hb_162094_010--Hb_003693_060 Hb_001338_160--Hb_001155_020 Hb_001338_160--Hb_003963_040 Hb_001338_160--Hb_001338_150 Hb_001338_160--Hb_003032_090 Hb_002835_090 Hb_002835_090 Hb_001338_160--Hb_002835_090 Hb_072212_010 Hb_072212_010 Hb_001155_020--Hb_072212_010 Hb_001155_020--Hb_003963_040 Hb_004611_040 Hb_004611_040 Hb_001155_020--Hb_004611_040 Hb_001155_020--Hb_002835_090 Hb_001155_020--Hb_001338_150 Hb_000059_120 Hb_000059_120 Hb_008206_070--Hb_000059_120 Hb_007040_010 Hb_007040_010 Hb_008206_070--Hb_007040_010 Hb_001390_080 Hb_001390_080 Hb_008206_070--Hb_001390_080 Hb_000628_010 Hb_000628_010 Hb_008206_070--Hb_000628_010 Hb_008643_050 Hb_008643_050 Hb_008206_070--Hb_008643_050 Hb_000049_220--Hb_007504_030 Hb_134546_010 Hb_134546_010 Hb_000049_220--Hb_134546_010 Hb_001257_150 Hb_001257_150 Hb_000049_220--Hb_001257_150 Hb_000189_400 Hb_000189_400 Hb_000049_220--Hb_000189_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0167727 0 0.0412603 0 0.0135187 0.013487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.101227

CAGE analysis