Hb_027394_010

Information

Type -
Description -
Location Contig27394: 30-1513
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021588mg
description hypothetical protein
nr
ID XP_009764284.1
description PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M5XKU8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021588mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027394_010 0.0 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
2 Hb_068347_020 2.13061e-05 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_009066_010 0.0051198321 - - -
4 Hb_021068_020 0.0259822533 - - -
5 Hb_136856_010 0.0439640687 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
6 Hb_013205_010 0.077118258 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
7 Hb_089491_010 0.0834313438 - - -
8 Hb_009268_110 0.0853353435 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
9 Hb_010399_020 0.1094106937 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
10 Hb_008151_030 0.1132979936 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_034667_010 0.1197692192 - - -
12 Hb_000260_190 0.1239072294 - - -
13 Hb_002400_450 0.1263362607 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
14 Hb_003400_030 0.1310359559 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
15 Hb_000944_010 0.1311336492 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
16 Hb_013727_010 0.1337168525 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
17 Hb_008473_010 0.1417434213 - - PREDICTED: laccase-14-like [Jatropha curcas]
18 Hb_091369_010 0.1427197206 - - -
19 Hb_002673_050 0.1447358502 - - -
20 Hb_076583_010 0.177327346 - - hypothetical protein JCGZ_17827 [Jatropha curcas]

Gene co-expression network

sample Hb_027394_010 Hb_027394_010 Hb_068347_020 Hb_068347_020 Hb_027394_010--Hb_068347_020 Hb_009066_010 Hb_009066_010 Hb_027394_010--Hb_009066_010 Hb_021068_020 Hb_021068_020 Hb_027394_010--Hb_021068_020 Hb_136856_010 Hb_136856_010 Hb_027394_010--Hb_136856_010 Hb_013205_010 Hb_013205_010 Hb_027394_010--Hb_013205_010 Hb_089491_010 Hb_089491_010 Hb_027394_010--Hb_089491_010 Hb_068347_020--Hb_009066_010 Hb_068347_020--Hb_021068_020 Hb_068347_020--Hb_136856_010 Hb_068347_020--Hb_013205_010 Hb_068347_020--Hb_089491_010 Hb_009066_010--Hb_021068_020 Hb_009066_010--Hb_136856_010 Hb_009066_010--Hb_089491_010 Hb_009268_110 Hb_009268_110 Hb_009066_010--Hb_009268_110 Hb_021068_020--Hb_136856_010 Hb_021068_020--Hb_089491_010 Hb_021068_020--Hb_009268_110 Hb_136856_010--Hb_089491_010 Hb_136856_010--Hb_009268_110 Hb_010399_020 Hb_010399_020 Hb_013205_010--Hb_010399_020 Hb_008151_030 Hb_008151_030 Hb_013205_010--Hb_008151_030 Hb_034667_010 Hb_034667_010 Hb_013205_010--Hb_034667_010 Hb_000260_190 Hb_000260_190 Hb_013205_010--Hb_000260_190 Hb_002400_450 Hb_002400_450 Hb_013205_010--Hb_002400_450 Hb_003400_030 Hb_003400_030 Hb_013205_010--Hb_003400_030 Hb_089491_010--Hb_009268_110 Hb_013727_010 Hb_013727_010 Hb_089491_010--Hb_013727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0181859 0.0318869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis