Hb_027400_020

Information

Type -
Description -
Location Contig27400: 6366-7350
Sequence    

Annotation

kegg
ID rcu:RCOM_1180730
description hypothetical protein
nr
ID XP_012076211.1
description PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
swissprot
ID Q9FK81
description Uncharacterized protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1
trembl
ID A0A067KHA7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11266 PE=4 SV=1
Gene Ontology
ID GO:0009507
description stress responsive a b barrel domain family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28689: 6435-7350
cDNA
(Sanger)
(ID:Location)		 001_P08.ab1: 6556-7350

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027400_020 0.0 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
2 Hb_000076_280 0.0436213352 - - PREDICTED: pectinesterase-like [Populus euphratica]
3 Hb_002616_020 0.0636442036 - - PREDICTED: peroxidase 3 [Jatropha curcas]
4 Hb_000419_140 0.0674444423 - - Aquaporin PIP2.1, putative [Ricinus communis]
5 Hb_001769_070 0.0723353633 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
6 Hb_002869_090 0.0834617263 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
7 Hb_000329_010 0.0878475333 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
8 Hb_027405_010 0.0950254485 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
9 Hb_000834_130 0.09689915 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005000_280 0.0975635792 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
11 Hb_001777_010 0.1014978697 - - -
12 Hb_000561_040 0.1033763585 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
13 Hb_002518_020 0.1043769936 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
14 Hb_001645_030 0.1059071403 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
15 Hb_002809_080 0.1059863116 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000659_050 0.1071543256 - - PREDICTED: basic blue protein-like [Jatropha curcas]
17 Hb_000352_360 0.1089631992 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
18 Hb_002203_020 0.115746754 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000243_340 0.1162661725 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
20 Hb_000389_100 0.1207439352 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]

Gene co-expression network

sample Hb_027400_020 Hb_027400_020 Hb_000076_280 Hb_000076_280 Hb_027400_020--Hb_000076_280 Hb_002616_020 Hb_002616_020 Hb_027400_020--Hb_002616_020 Hb_000419_140 Hb_000419_140 Hb_027400_020--Hb_000419_140 Hb_001769_070 Hb_001769_070 Hb_027400_020--Hb_001769_070 Hb_002869_090 Hb_002869_090 Hb_027400_020--Hb_002869_090 Hb_000329_010 Hb_000329_010 Hb_027400_020--Hb_000329_010 Hb_000076_280--Hb_001769_070 Hb_000076_280--Hb_000419_140 Hb_000076_280--Hb_000329_010 Hb_000076_280--Hb_002616_020 Hb_002809_080 Hb_002809_080 Hb_000076_280--Hb_002809_080 Hb_000352_360 Hb_000352_360 Hb_002616_020--Hb_000352_360 Hb_002616_020--Hb_002869_090 Hb_002616_020--Hb_000419_140 Hb_003849_170 Hb_003849_170 Hb_002616_020--Hb_003849_170 Hb_001777_010 Hb_001777_010 Hb_000419_140--Hb_001777_010 Hb_000419_140--Hb_001769_070 Hb_000419_140--Hb_000329_010 Hb_001769_070--Hb_000329_010 Hb_002518_020 Hb_002518_020 Hb_001769_070--Hb_002518_020 Hb_005000_280 Hb_005000_280 Hb_001769_070--Hb_005000_280 Hb_000659_050 Hb_000659_050 Hb_002869_090--Hb_000659_050 Hb_000327_100 Hb_000327_100 Hb_002869_090--Hb_000327_100 Hb_002869_090--Hb_000352_360 Hb_000561_040 Hb_000561_040 Hb_002869_090--Hb_000561_040 Hb_000329_010--Hb_002809_080 Hb_031224_010 Hb_031224_010 Hb_000329_010--Hb_031224_010 Hb_149055_010 Hb_149055_010 Hb_000329_010--Hb_149055_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.934016 17.5509 32.1134 165.783 0.592903 0.250804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0710201 0.05584 0 43.6814 31.3741

CAGE analysis