Hb_027402_080

Information

Type -
Description -
Location Contig27402: 50695-58530
Sequence    

Annotation

kegg
ID rcu:RCOM_1471620
description Calmodulin, putative
nr
ID XP_012080551.1
description PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
swissprot
ID Q93Z27
description Probable calcium-binding protein CML45 OS=Arabidopsis thaliana GN=CML45 PE=1 SV=1
trembl
ID A0A067KHH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11640 PE=4 SV=1
Gene Ontology
ID GO:0046872
description probable calcium-binding protein cml45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027402_080 0.0 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
2 Hb_010889_020 0.2349126565 - - -
3 Hb_000608_220 0.2490481444 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
4 Hb_001554_010 0.271559148 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
5 Hb_000661_060 0.2730333048 - - hypothetical protein JCGZ_06411 [Jatropha curcas]
6 Hb_002131_040 0.2767708403 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
7 Hb_000933_100 0.2794809901 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000384_110 0.2934880072 - - conserved hypothetical protein [Ricinus communis]
9 Hb_144096_010 0.2983057631 - - aldo-keto reductase, putative [Ricinus communis]
10 Hb_001124_220 0.3035134555 - - DsRNA-binding protein 5, putative isoform 1 [Theobroma cacao]
11 Hb_018118_030 0.3104940643 - - PREDICTED: putative multidrug resistance protein, partial [Musa acuminata subsp. malaccensis]
12 Hb_026549_010 0.3311933646 - - -
13 Hb_002217_470 0.3331463915 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
14 Hb_005548_020 0.3347242859 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
15 Hb_000133_070 0.3402020332 - - -
16 Hb_023344_070 0.3422607655 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
17 Hb_002876_160 0.342314487 - - sucrose transporter 1 [Hevea brasiliensis]
18 Hb_000051_050 0.3432005001 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
19 Hb_000566_030 0.3441469763 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
20 Hb_001143_240 0.3463958675 - - 8-oxoguanine DNA glycosylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_027402_080 Hb_027402_080 Hb_010889_020 Hb_010889_020 Hb_027402_080--Hb_010889_020 Hb_000608_220 Hb_000608_220 Hb_027402_080--Hb_000608_220 Hb_001554_010 Hb_001554_010 Hb_027402_080--Hb_001554_010 Hb_000661_060 Hb_000661_060 Hb_027402_080--Hb_000661_060 Hb_002131_040 Hb_002131_040 Hb_027402_080--Hb_002131_040 Hb_000933_100 Hb_000933_100 Hb_027402_080--Hb_000933_100 Hb_010889_020--Hb_000608_220 Hb_010889_020--Hb_001554_010 Hb_144096_010 Hb_144096_010 Hb_010889_020--Hb_144096_010 Hb_002876_160 Hb_002876_160 Hb_010889_020--Hb_002876_160 Hb_000384_110 Hb_000384_110 Hb_010889_020--Hb_000384_110 Hb_000608_220--Hb_000933_100 Hb_001143_240 Hb_001143_240 Hb_000608_220--Hb_001143_240 Hb_000051_050 Hb_000051_050 Hb_000608_220--Hb_000051_050 Hb_004945_020 Hb_004945_020 Hb_000608_220--Hb_004945_020 Hb_021576_020 Hb_021576_020 Hb_001554_010--Hb_021576_020 Hb_003464_070 Hb_003464_070 Hb_001554_010--Hb_003464_070 Hb_026549_010 Hb_026549_010 Hb_001554_010--Hb_026549_010 Hb_002998_070 Hb_002998_070 Hb_001554_010--Hb_002998_070 Hb_023344_070 Hb_023344_070 Hb_001554_010--Hb_023344_070 Hb_001767_130 Hb_001767_130 Hb_000661_060--Hb_001767_130 Hb_000679_190 Hb_000679_190 Hb_000661_060--Hb_000679_190 Hb_002781_030 Hb_002781_030 Hb_000661_060--Hb_002781_030 Hb_050147_010 Hb_050147_010 Hb_000661_060--Hb_050147_010 Hb_000915_240 Hb_000915_240 Hb_000661_060--Hb_000915_240 Hb_029510_100 Hb_029510_100 Hb_000661_060--Hb_029510_100 Hb_006816_170 Hb_006816_170 Hb_002131_040--Hb_006816_170 Hb_024505_050 Hb_024505_050 Hb_002131_040--Hb_024505_050 Hb_001329_240 Hb_001329_240 Hb_002131_040--Hb_001329_240 Hb_008725_150 Hb_008725_150 Hb_002131_040--Hb_008725_150 Hb_001247_200 Hb_001247_200 Hb_002131_040--Hb_001247_200 Hb_002374_430 Hb_002374_430 Hb_002131_040--Hb_002374_430 Hb_004635_130 Hb_004635_130 Hb_000933_100--Hb_004635_130 Hb_002316_130 Hb_002316_130 Hb_000933_100--Hb_002316_130 Hb_000190_190 Hb_000190_190 Hb_000933_100--Hb_000190_190 Hb_004137_100 Hb_004137_100 Hb_000933_100--Hb_004137_100 Hb_000933_100--Hb_006816_170 Hb_002391_360 Hb_002391_360 Hb_000933_100--Hb_002391_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0518641 0.0193496 0.13819 0.129307 0.0297878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0465135 0.0848639 0.112598 0

CAGE analysis