Hb_027402_100

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig27402: 75579-78762
Sequence    

Annotation

kegg
ID cit:102629672
description cyclic dof factor 3-like
nr
ID KDP31262.1
description hypothetical protein JCGZ_11638 [Jatropha curcas]
swissprot
ID Q8LFV3
description Cyclic dof factor 3 OS=Arabidopsis thaliana GN=CDF3 PE=1 SV=2
trembl
ID A0A067K585
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11638 PE=4 SV=1
Gene Ontology
ID GO:0003677
description cyclic dof factor 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28701: 77091-78739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027402_100 0.0 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
2 Hb_132840_090 0.1237432693 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
3 Hb_003106_240 0.1323211161 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
4 Hb_004218_080 0.1373765003 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
5 Hb_000753_140 0.1383757243 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
6 Hb_000318_410 0.1414102897 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
7 Hb_011457_080 0.1450341907 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
8 Hb_172676_010 0.1506233532 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
9 Hb_007193_030 0.1521493361 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
10 Hb_006618_020 0.1524214974 - - Vacuolar-processing enzyme precursor [Ricinus communis]
11 Hb_004166_010 0.1577312363 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
12 Hb_001369_020 0.1592938357 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
13 Hb_000035_060 0.1597703604 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
14 Hb_002910_010 0.1599838246 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
15 Hb_006040_070 0.1621354315 - - orf107b gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
16 Hb_008253_040 0.1681605998 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
17 Hb_002534_050 0.1689641742 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
18 Hb_002006_060 0.1698868282 - - PREDICTED: oleosin 1-like [Jatropha curcas]
19 Hb_000649_300 0.1738907393 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
20 Hb_000172_080 0.1744819188 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_027402_100 Hb_027402_100 Hb_132840_090 Hb_132840_090 Hb_027402_100--Hb_132840_090 Hb_003106_240 Hb_003106_240 Hb_027402_100--Hb_003106_240 Hb_004218_080 Hb_004218_080 Hb_027402_100--Hb_004218_080 Hb_000753_140 Hb_000753_140 Hb_027402_100--Hb_000753_140 Hb_000318_410 Hb_000318_410 Hb_027402_100--Hb_000318_410 Hb_011457_080 Hb_011457_080 Hb_027402_100--Hb_011457_080 Hb_009040_010 Hb_009040_010 Hb_132840_090--Hb_009040_010 Hb_132840_090--Hb_004218_080 Hb_011360_090 Hb_011360_090 Hb_132840_090--Hb_011360_090 Hb_001662_170 Hb_001662_170 Hb_132840_090--Hb_001662_170 Hb_002534_050 Hb_002534_050 Hb_132840_090--Hb_002534_050 Hb_003106_240--Hb_011457_080 Hb_003106_240--Hb_004218_080 Hb_010180_050 Hb_010180_050 Hb_003106_240--Hb_010180_050 Hb_000035_060 Hb_000035_060 Hb_003106_240--Hb_000035_060 Hb_007193_030 Hb_007193_030 Hb_003106_240--Hb_007193_030 Hb_004218_080--Hb_007193_030 Hb_005725_280 Hb_005725_280 Hb_004218_080--Hb_005725_280 Hb_002498_250 Hb_002498_250 Hb_004218_080--Hb_002498_250 Hb_000156_080 Hb_000156_080 Hb_004218_080--Hb_000156_080 Hb_000365_340 Hb_000365_340 Hb_004218_080--Hb_000365_340 Hb_000753_140--Hb_000318_410 Hb_002804_010 Hb_002804_010 Hb_000753_140--Hb_002804_010 Hb_000086_640 Hb_000086_640 Hb_000753_140--Hb_000086_640 Hb_001386_020 Hb_001386_020 Hb_000753_140--Hb_001386_020 Hb_015807_080 Hb_015807_080 Hb_000753_140--Hb_015807_080 Hb_132840_020 Hb_132840_020 Hb_000753_140--Hb_132840_020 Hb_033930_010 Hb_033930_010 Hb_000318_410--Hb_033930_010 Hb_000318_410--Hb_132840_020 Hb_000622_210 Hb_000622_210 Hb_000318_410--Hb_000622_210 Hb_002639_130 Hb_002639_130 Hb_000318_410--Hb_002639_130 Hb_000318_410--Hb_000086_640 Hb_011457_080--Hb_000156_080 Hb_011457_080--Hb_010180_050 Hb_028285_020 Hb_028285_020 Hb_011457_080--Hb_028285_020 Hb_011457_080--Hb_004218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.71907 104.117 42.3635 20.6354 2.66202 5.50365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.7841 1.34167 3.55193 10.7592 45.2085

CAGE analysis