Hb_027402_130

Information

Type -
Description -
Location Contig27402: 92536-105082
Sequence    

Annotation

kegg
ID rcu:RCOM_1471880
description malate dehydrogenase, putative (EC:1.1.1.37)
nr
ID XP_002514750.1
description malate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9CA67
description Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1
trembl
ID B9RLY1
description Malate dehydrogenase, putative OS=Ricinus communis GN=RCOM_1471880 PE=3 SV=1
Gene Ontology
ID GO:0005739
description nodule-enhanced malate dehydrogenase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28706: 102111-102232 , PASA_asmbl_28707: 102244-104936
cDNA
(Sanger)
(ID:Location)		 029_N05.ab1: 102414-104031 , 036_C18.ab1: 102242-103886

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027402_130 0.0 - - malate dehydrogenase, putative [Ricinus communis]
2 Hb_004291_040 0.0843678196 - - hexokinase [Manihot esculenta]
3 Hb_000270_170 0.0884322123 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
4 Hb_000243_120 0.0940155171 - - PREDICTED: MORC family CW-type zinc finger protein 3-like isoform X2 [Jatropha curcas]
5 Hb_005260_030 0.0941640462 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
6 Hb_106890_010 0.0946714518 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
7 Hb_003490_060 0.0970585086 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
8 Hb_001488_020 0.0974830409 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
9 Hb_007933_040 0.0975726885 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
10 Hb_000101_390 0.097616403 - - PREDICTED: mucin-5B [Jatropha curcas]
11 Hb_001504_060 0.0982834349 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
12 Hb_011674_040 0.0992651608 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
13 Hb_000009_030 0.0999149425 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
14 Hb_000976_110 0.1005448206 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
15 Hb_002675_250 0.1064550907 - - aspartate aminotransferase, putative [Ricinus communis]
16 Hb_012633_050 0.1064800611 - - zinc finger protein, putative [Ricinus communis]
17 Hb_028960_030 0.1071478332 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
18 Hb_163256_010 0.1083937817 - - PREDICTED: phosphoglucomutase, chloroplastic [Jatropha curcas]
19 Hb_007741_120 0.1103245285 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
20 Hb_030736_040 0.1103689095 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_027402_130 Hb_027402_130 Hb_004291_040 Hb_004291_040 Hb_027402_130--Hb_004291_040 Hb_000270_170 Hb_000270_170 Hb_027402_130--Hb_000270_170 Hb_000243_120 Hb_000243_120 Hb_027402_130--Hb_000243_120 Hb_005260_030 Hb_005260_030 Hb_027402_130--Hb_005260_030 Hb_106890_010 Hb_106890_010 Hb_027402_130--Hb_106890_010 Hb_003490_060 Hb_003490_060 Hb_027402_130--Hb_003490_060 Hb_004291_040--Hb_000243_120 Hb_001564_070 Hb_001564_070 Hb_004291_040--Hb_001564_070 Hb_004291_040--Hb_106890_010 Hb_000009_030 Hb_000009_030 Hb_004291_040--Hb_000009_030 Hb_028960_030 Hb_028960_030 Hb_004291_040--Hb_028960_030 Hb_000960_080 Hb_000960_080 Hb_000270_170--Hb_000960_080 Hb_001507_050 Hb_001507_050 Hb_000270_170--Hb_001507_050 Hb_011674_040 Hb_011674_040 Hb_000270_170--Hb_011674_040 Hb_006100_020 Hb_006100_020 Hb_000270_170--Hb_006100_020 Hb_000318_150 Hb_000318_150 Hb_000270_170--Hb_000318_150 Hb_001488_020 Hb_001488_020 Hb_000270_170--Hb_001488_020 Hb_068804_090 Hb_068804_090 Hb_000243_120--Hb_068804_090 Hb_009158_060 Hb_009158_060 Hb_000243_120--Hb_009158_060 Hb_030736_040 Hb_030736_040 Hb_000243_120--Hb_030736_040 Hb_000243_120--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_000243_120--Hb_003355_010 Hb_013749_050 Hb_013749_050 Hb_000243_120--Hb_013749_050 Hb_005489_040 Hb_005489_040 Hb_005260_030--Hb_005489_040 Hb_007413_010 Hb_007413_010 Hb_005260_030--Hb_007413_010 Hb_073171_070 Hb_073171_070 Hb_005260_030--Hb_073171_070 Hb_003117_030 Hb_003117_030 Hb_005260_030--Hb_003117_030 Hb_017469_110 Hb_017469_110 Hb_005260_030--Hb_017469_110 Hb_005260_030--Hb_000270_170 Hb_106890_010--Hb_003355_010 Hb_106890_010--Hb_030736_040 Hb_106890_010--Hb_003490_060 Hb_005571_010 Hb_005571_010 Hb_106890_010--Hb_005571_010 Hb_007741_120 Hb_007741_120 Hb_106890_010--Hb_007741_120 Hb_019654_020 Hb_019654_020 Hb_106890_010--Hb_019654_020 Hb_002828_060 Hb_002828_060 Hb_003490_060--Hb_002828_060 Hb_000976_110 Hb_000976_110 Hb_003490_060--Hb_000976_110 Hb_002392_020 Hb_002392_020 Hb_003490_060--Hb_002392_020 Hb_000109_260 Hb_000109_260 Hb_003490_060--Hb_000109_260 Hb_003490_060--Hb_003355_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4985 20.5557 37.0509 19.6912 8.76198 9.3509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0406 11.2845 14.2044 38.162 43.4161

CAGE analysis