Hb_027405_020

Information

Type -
Description -
Location Contig27405: 21816-24799
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24570g
description POPTRDRAFT_815354; ankyrin repeat family protein
nr
ID XP_012065023.1
description PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
swissprot
ID Q94B55
description Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1
trembl
ID A0A067L722
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05693 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase xbat31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28715: 21890-24767
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027405_020 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
2 Hb_003125_060 0.0812776143 - - PREDICTED: snurportin-1 [Jatropha curcas]
3 Hb_003020_110 0.0822816706 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
4 Hb_000310_080 0.0839635218 - - hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]
5 Hb_000029_160 0.0849524922 - - Nitrilase, putative [Ricinus communis]
6 Hb_000172_550 0.0878641754 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
7 Hb_023020_060 0.0896914536 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
8 Hb_001226_180 0.0902763497 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
9 Hb_031754_010 0.0913724035 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
10 Hb_001975_020 0.0913811535 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
11 Hb_002133_030 0.0915654408 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
12 Hb_004920_130 0.0947628826 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
13 Hb_000614_080 0.0958674788 - - -
14 Hb_000343_210 0.096447686 - - ran-binding protein, putative [Ricinus communis]
15 Hb_002659_060 0.1003938232 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
16 Hb_007305_010 0.100490785 - - PREDICTED: girdin-like [Jatropha curcas]
17 Hb_002942_220 0.1008760997 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
18 Hb_007885_070 0.1033471955 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
19 Hb_000417_160 0.1037190729 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
20 Hb_000424_010 0.1053347954 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_027405_020 Hb_027405_020 Hb_003125_060 Hb_003125_060 Hb_027405_020--Hb_003125_060 Hb_003020_110 Hb_003020_110 Hb_027405_020--Hb_003020_110 Hb_000310_080 Hb_000310_080 Hb_027405_020--Hb_000310_080 Hb_000029_160 Hb_000029_160 Hb_027405_020--Hb_000029_160 Hb_000172_550 Hb_000172_550 Hb_027405_020--Hb_000172_550 Hb_023020_060 Hb_023020_060 Hb_027405_020--Hb_023020_060 Hb_002133_030 Hb_002133_030 Hb_003125_060--Hb_002133_030 Hb_000685_080 Hb_000685_080 Hb_003125_060--Hb_000685_080 Hb_000487_100 Hb_000487_100 Hb_003125_060--Hb_000487_100 Hb_003125_060--Hb_023020_060 Hb_007305_010 Hb_007305_010 Hb_003125_060--Hb_007305_010 Hb_000343_210 Hb_000343_210 Hb_003020_110--Hb_000343_210 Hb_164010_060 Hb_164010_060 Hb_003020_110--Hb_164010_060 Hb_000342_110 Hb_000342_110 Hb_003020_110--Hb_000342_110 Hb_003581_120 Hb_003581_120 Hb_003020_110--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_003020_110--Hb_002400_180 Hb_031042_070 Hb_031042_070 Hb_003020_110--Hb_031042_070 Hb_000310_080--Hb_003020_110 Hb_000310_080--Hb_000029_160 Hb_010128_090 Hb_010128_090 Hb_000310_080--Hb_010128_090 Hb_000032_320 Hb_000032_320 Hb_000310_080--Hb_000032_320 Hb_000373_270 Hb_000373_270 Hb_000310_080--Hb_000373_270 Hb_002960_060 Hb_002960_060 Hb_000029_160--Hb_002960_060 Hb_000029_160--Hb_000172_550 Hb_001975_070 Hb_001975_070 Hb_000029_160--Hb_001975_070 Hb_002078_420 Hb_002078_420 Hb_000029_160--Hb_002078_420 Hb_000076_290 Hb_000076_290 Hb_000172_550--Hb_000076_290 Hb_004032_350 Hb_004032_350 Hb_000172_550--Hb_004032_350 Hb_002725_070 Hb_002725_070 Hb_000172_550--Hb_002725_070 Hb_002820_040 Hb_002820_040 Hb_000172_550--Hb_002820_040 Hb_005295_040 Hb_005295_040 Hb_000172_550--Hb_005295_040 Hb_023020_060--Hb_002133_030 Hb_000640_020 Hb_000640_020 Hb_023020_060--Hb_000640_020 Hb_023020_060--Hb_000343_210 Hb_001396_290 Hb_001396_290 Hb_023020_060--Hb_001396_290 Hb_023020_060--Hb_003020_110 Hb_000504_160 Hb_000504_160 Hb_023020_060--Hb_000504_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
139.63 74.2357 17.5412 27.0696 137.936 86.3736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.0869 28.0069 40.2083 45.3548 21.1053

CAGE analysis