Hb_027411_030

Information

Type -
Description -
Location Contig27411: 46745-48195
Sequence    

Annotation

kegg
ID rcu:RCOM_1314740
description metal ion binding protein, putative
nr
ID XP_002518950.1
description metal ion binding protein, putative [Ricinus communis]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9RYY1
description Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_1314740 PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy metal-associated isoprenylated plant protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28716: 46479-48242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027411_030 0.0 - - metal ion binding protein, putative [Ricinus communis]
2 Hb_004757_010 0.0714654775 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
3 Hb_011344_050 0.0781045991 - - PREDICTED: 21 kDa protein [Jatropha curcas]
4 Hb_001579_160 0.0822038265 - - PREDICTED: kininogen-1-like [Jatropha curcas]
5 Hb_000991_060 0.0834304767 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
6 Hb_001141_430 0.085539706 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
7 Hb_145975_010 0.0915642642 - - cytochrome P450, putative [Ricinus communis]
8 Hb_001712_010 0.0949005384 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
9 Hb_000628_070 0.0958499602 - - -
10 Hb_001343_060 0.0971547194 - - Cytochrome P450 [Theobroma cacao]
11 Hb_159791_010 0.0999206922 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
12 Hb_013399_060 0.1003406222 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
13 Hb_006618_100 0.1007697695 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
14 Hb_000244_290 0.1016733688 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
15 Hb_000243_240 0.1064325297 - - cytochrome P450 family protein [Populus trichocarpa]
16 Hb_000959_170 0.1080646174 - - Cell division protein kinase 7, putative [Ricinus communis]
17 Hb_004158_040 0.1093612928 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
18 Hb_001454_350 0.1095025039 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
19 Hb_001296_010 0.109833981 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001157_120 0.1103251298 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]

Gene co-expression network

sample Hb_027411_030 Hb_027411_030 Hb_004757_010 Hb_004757_010 Hb_027411_030--Hb_004757_010 Hb_011344_050 Hb_011344_050 Hb_027411_030--Hb_011344_050 Hb_001579_160 Hb_001579_160 Hb_027411_030--Hb_001579_160 Hb_000991_060 Hb_000991_060 Hb_027411_030--Hb_000991_060 Hb_001141_430 Hb_001141_430 Hb_027411_030--Hb_001141_430 Hb_145975_010 Hb_145975_010 Hb_027411_030--Hb_145975_010 Hb_159791_010 Hb_159791_010 Hb_004757_010--Hb_159791_010 Hb_001343_060 Hb_001343_060 Hb_004757_010--Hb_001343_060 Hb_004757_010--Hb_001141_430 Hb_004757_010--Hb_011344_050 Hb_001712_010 Hb_001712_010 Hb_004757_010--Hb_001712_010 Hb_010863_020 Hb_010863_020 Hb_011344_050--Hb_010863_020 Hb_006618_100 Hb_006618_100 Hb_011344_050--Hb_006618_100 Hb_013399_060 Hb_013399_060 Hb_011344_050--Hb_013399_060 Hb_001296_010 Hb_001296_010 Hb_011344_050--Hb_001296_010 Hb_009421_060 Hb_009421_060 Hb_001579_160--Hb_009421_060 Hb_004158_040 Hb_004158_040 Hb_001579_160--Hb_004158_040 Hb_001541_170 Hb_001541_170 Hb_001579_160--Hb_001541_170 Hb_001454_350 Hb_001454_350 Hb_001579_160--Hb_001454_350 Hb_001722_110 Hb_001722_110 Hb_001579_160--Hb_001722_110 Hb_180088_010 Hb_180088_010 Hb_001579_160--Hb_180088_010 Hb_006252_070 Hb_006252_070 Hb_000991_060--Hb_006252_070 Hb_000291_240 Hb_000291_240 Hb_000991_060--Hb_000291_240 Hb_000991_060--Hb_001296_010 Hb_000991_060--Hb_013399_060 Hb_000991_060--Hb_004757_010 Hb_001141_430--Hb_001343_060 Hb_001141_430--Hb_159791_010 Hb_011344_110 Hb_011344_110 Hb_001141_430--Hb_011344_110 Hb_000816_170 Hb_000816_170 Hb_001141_430--Hb_000816_170 Hb_001141_430--Hb_001712_010 Hb_145975_010--Hb_006618_100 Hb_145975_010--Hb_004757_010 Hb_145975_010--Hb_001343_060 Hb_145975_010--Hb_001141_430 Hb_001269_430 Hb_001269_430 Hb_145975_010--Hb_001269_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.49553 3.13688 69.7892 0 0.800717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.68614 8.20104

CAGE analysis