Hb_027428_010

Information

Type -
Description -
Location Contig27428: 1024-2708
Sequence    

Annotation

kegg
ID rcu:RCOM_0611740
description alpha-1,3-mannosyltransferase, putative
nr
ID XP_002525620.1
description alpha-1,3-mannosyltransferase, putative [Ricinus communis]
swissprot
ID Q9H553
description Alpha-1,3/1,6-mannosyltransferase ALG2 OS=Homo sapiens GN=ALG2 PE=1 SV=1
trembl
ID B9SI01
description Alpha-1,3-mannosyltransferase, putative OS=Ricinus communis GN=RCOM_0611740 PE=4 SV=1
Gene Ontology
ID GO:0004378
description alpha- -mannosyltransferase alg2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027428_010 0.0 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
2 Hb_002872_030 0.0414312833 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
3 Hb_073973_130 0.0560231291 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
4 Hb_005337_090 0.0626408161 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
5 Hb_006588_070 0.0631632618 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
6 Hb_000185_070 0.0666687867 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010381_090 0.0668266489 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
8 Hb_008453_140 0.0702114725 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
9 Hb_000649_230 0.0702489013 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
10 Hb_001142_030 0.0724998361 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
11 Hb_022132_050 0.0730086974 - - GTP binding protein, putative [Ricinus communis]
12 Hb_032920_060 0.0736264314 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]
13 Hb_004096_180 0.0742233278 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
14 Hb_002740_030 0.0754776074 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
15 Hb_001751_140 0.0756470334 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
16 Hb_007416_300 0.0782729722 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
17 Hb_001357_350 0.0810514283 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000302_270 0.0814152851 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
19 Hb_000610_010 0.0830057453 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
20 Hb_000107_190 0.0832253094 - - 50S ribosomal protein L20 [Hevea brasiliensis]

Gene co-expression network

sample Hb_027428_010 Hb_027428_010 Hb_002872_030 Hb_002872_030 Hb_027428_010--Hb_002872_030 Hb_073973_130 Hb_073973_130 Hb_027428_010--Hb_073973_130 Hb_005337_090 Hb_005337_090 Hb_027428_010--Hb_005337_090 Hb_006588_070 Hb_006588_070 Hb_027428_010--Hb_006588_070 Hb_000185_070 Hb_000185_070 Hb_027428_010--Hb_000185_070 Hb_010381_090 Hb_010381_090 Hb_027428_010--Hb_010381_090 Hb_002872_030--Hb_010381_090 Hb_008453_140 Hb_008453_140 Hb_002872_030--Hb_008453_140 Hb_007416_300 Hb_007416_300 Hb_002872_030--Hb_007416_300 Hb_002872_030--Hb_006588_070 Hb_002872_030--Hb_073973_130 Hb_000107_190 Hb_000107_190 Hb_073973_130--Hb_000107_190 Hb_022132_050 Hb_022132_050 Hb_073973_130--Hb_022132_050 Hb_073973_130--Hb_005337_090 Hb_000610_010 Hb_000610_010 Hb_073973_130--Hb_000610_010 Hb_001089_110 Hb_001089_110 Hb_005337_090--Hb_001089_110 Hb_000308_030 Hb_000308_030 Hb_005337_090--Hb_000308_030 Hb_000005_220 Hb_000005_220 Hb_005337_090--Hb_000005_220 Hb_033834_030 Hb_033834_030 Hb_005337_090--Hb_033834_030 Hb_000776_100 Hb_000776_100 Hb_006588_070--Hb_000776_100 Hb_006588_070--Hb_022132_050 Hb_001051_080 Hb_001051_080 Hb_006588_070--Hb_001051_080 Hb_000096_120 Hb_000096_120 Hb_006588_070--Hb_000096_120 Hb_000302_270 Hb_000302_270 Hb_000185_070--Hb_000302_270 Hb_000185_070--Hb_005337_090 Hb_001981_030 Hb_001981_030 Hb_000185_070--Hb_001981_030 Hb_003528_010 Hb_003528_010 Hb_000185_070--Hb_003528_010 Hb_000185_070--Hb_002872_030 Hb_010381_090--Hb_007416_300 Hb_010381_090--Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_010381_090--Hb_120410_010 Hb_001142_030 Hb_001142_030 Hb_010381_090--Hb_001142_030 Hb_003549_150 Hb_003549_150 Hb_010381_090--Hb_003549_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.62024 3.79439 5.73509 4.27002 3.75566 4.85093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.55393 4.9968 3.43119 3.02796 2.15989

CAGE analysis