Hb_027445_030

Information

Type -
Description -
Location Contig27445: 16862-18884
Sequence    

Annotation

kegg
ID rcu:RCOM_1064470
description F-box/LRR-repeat protein, putative
nr
ID XP_002521466.1
description F-box/LRR-repeat protein, putative [Ricinus communis]
swissprot
ID Q9C5D2
description F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1
trembl
ID B9S647
description F-box/LRR-repeat protein, putative OS=Ricinus communis GN=RCOM_1064470 PE=4 SV=1
Gene Ontology
ID GO:0031348
description f-box lrr-repeat protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28736: 18035-18394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027445_030 0.0 - - F-box/LRR-repeat protein, putative [Ricinus communis]
2 Hb_001882_020 0.0926467002 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
3 Hb_000665_190 0.1017496935 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003994_300 0.1078553133 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000922_060 0.1100365671 - - kinesin light chain, putative [Ricinus communis]
6 Hb_005977_100 0.1122508747 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
7 Hb_008406_180 0.1128031372 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
8 Hb_000399_060 0.1152750802 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
9 Hb_009252_030 0.115460057 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
10 Hb_005192_010 0.1160016832 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
11 Hb_000300_090 0.1160182887 - - catalytic, putative [Ricinus communis]
12 Hb_003746_010 0.1161079479 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002226_080 0.1205672814 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
14 Hb_001029_040 0.1213875427 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
15 Hb_000058_110 0.1230145539 - - PREDICTED: putative BPI/LBP family protein At1g04970 isoform X1 [Jatropha curcas]
16 Hb_001157_230 0.1238465055 - - Protein AFR, putative [Ricinus communis]
17 Hb_001140_170 0.1241733408 - - PREDICTED: remorin [Jatropha curcas]
18 Hb_000189_480 0.1245887648 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
19 Hb_007477_050 0.1253017298 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
20 Hb_001049_150 0.1270627119 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_027445_030 Hb_027445_030 Hb_001882_020 Hb_001882_020 Hb_027445_030--Hb_001882_020 Hb_000665_190 Hb_000665_190 Hb_027445_030--Hb_000665_190 Hb_003994_300 Hb_003994_300 Hb_027445_030--Hb_003994_300 Hb_000922_060 Hb_000922_060 Hb_027445_030--Hb_000922_060 Hb_005977_100 Hb_005977_100 Hb_027445_030--Hb_005977_100 Hb_008406_180 Hb_008406_180 Hb_027445_030--Hb_008406_180 Hb_003746_010 Hb_003746_010 Hb_001882_020--Hb_003746_010 Hb_003682_070 Hb_003682_070 Hb_001882_020--Hb_003682_070 Hb_005192_010 Hb_005192_010 Hb_001882_020--Hb_005192_010 Hb_001882_020--Hb_000922_060 Hb_001029_040 Hb_001029_040 Hb_001882_020--Hb_001029_040 Hb_001049_150 Hb_001049_150 Hb_000665_190--Hb_001049_150 Hb_000665_190--Hb_003994_300 Hb_000665_190--Hb_003746_010 Hb_003540_080 Hb_003540_080 Hb_000665_190--Hb_003540_080 Hb_011926_040 Hb_011926_040 Hb_000665_190--Hb_011926_040 Hb_007477_050 Hb_007477_050 Hb_003994_300--Hb_007477_050 Hb_003994_300--Hb_003746_010 Hb_003994_300--Hb_001049_150 Hb_000399_060 Hb_000399_060 Hb_003994_300--Hb_000399_060 Hb_000922_060--Hb_003682_070 Hb_000000_310 Hb_000000_310 Hb_000922_060--Hb_000000_310 Hb_000922_060--Hb_005192_010 Hb_183086_030 Hb_183086_030 Hb_000922_060--Hb_183086_030 Hb_000300_510 Hb_000300_510 Hb_000922_060--Hb_000300_510 Hb_022250_010 Hb_022250_010 Hb_000922_060--Hb_022250_010 Hb_000049_020 Hb_000049_020 Hb_005977_100--Hb_000049_020 Hb_007545_010 Hb_007545_010 Hb_005977_100--Hb_007545_010 Hb_011310_110 Hb_011310_110 Hb_005977_100--Hb_011310_110 Hb_000212_420 Hb_000212_420 Hb_005977_100--Hb_000212_420 Hb_003209_130 Hb_003209_130 Hb_005977_100--Hb_003209_130 Hb_004102_170 Hb_004102_170 Hb_005977_100--Hb_004102_170 Hb_008406_180--Hb_000049_020 Hb_000890_230 Hb_000890_230 Hb_008406_180--Hb_000890_230 Hb_002400_320 Hb_002400_320 Hb_008406_180--Hb_002400_320 Hb_001157_230 Hb_001157_230 Hb_008406_180--Hb_001157_230 Hb_000056_130 Hb_000056_130 Hb_008406_180--Hb_000056_130 Hb_002226_080 Hb_002226_080 Hb_008406_180--Hb_002226_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.44445 6.76142 7.73503 22.4949 5.2151 8.30254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.84688 2.23339 3.33774 4.55739 15.8055

CAGE analysis