Hb_027445_080

Information

Type transcription factor
Description TF Family: LOB
Location Contig27445: 75154-76441
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35280g
description POPTRDRAFT_641633; LOB domain protein 25
nr
ID XP_002300051.1
description LOB domain protein 25 [Populus trichocarpa]
swissprot
ID Q8L8Q3
description LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3
trembl
ID B9GI56
description LOB domain protein 25 OS=Populus trichocarpa GN=POPTR_0001s35280g PE=4 SV=1
Gene Ontology
ID GO:0004088
description lob domain-containing protein 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28742: 74778-75860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027445_080 0.0 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
2 Hb_002762_070 0.05923372 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
3 Hb_017661_020 0.0670177072 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
4 Hb_005203_010 0.0777278441 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
5 Hb_031862_090 0.0858979833 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
6 Hb_004837_170 0.0874089986 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
7 Hb_002282_030 0.0941703363 - - -
8 Hb_000891_060 0.0969086226 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
9 Hb_000616_060 0.0988450907 - - -
10 Hb_000575_010 0.099558881 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
11 Hb_004341_010 0.1143378218 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
12 Hb_028207_030 0.1157433719 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
13 Hb_000365_290 0.1164106248 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
14 Hb_009543_040 0.1174061392 - - -
15 Hb_004218_230 0.1208458523 - - Peptide transporter, putative [Ricinus communis]
16 Hb_000703_320 0.1229160505 - - receptor-kinase, putative [Ricinus communis]
17 Hb_031954_010 0.1239492131 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_004156_010 0.1277817004 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
19 Hb_002735_010 0.1281300581 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
20 Hb_000127_070 0.1321304505 - - PREDICTED: peroxidase 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_027445_080 Hb_027445_080 Hb_002762_070 Hb_002762_070 Hb_027445_080--Hb_002762_070 Hb_017661_020 Hb_017661_020 Hb_027445_080--Hb_017661_020 Hb_005203_010 Hb_005203_010 Hb_027445_080--Hb_005203_010 Hb_031862_090 Hb_031862_090 Hb_027445_080--Hb_031862_090 Hb_004837_170 Hb_004837_170 Hb_027445_080--Hb_004837_170 Hb_002282_030 Hb_002282_030 Hb_027445_080--Hb_002282_030 Hb_000365_290 Hb_000365_290 Hb_002762_070--Hb_000365_290 Hb_002762_070--Hb_017661_020 Hb_002762_070--Hb_004837_170 Hb_028207_030 Hb_028207_030 Hb_002762_070--Hb_028207_030 Hb_002762_070--Hb_031862_090 Hb_000127_070 Hb_000127_070 Hb_017661_020--Hb_000127_070 Hb_012395_150 Hb_012395_150 Hb_017661_020--Hb_012395_150 Hb_017661_020--Hb_005203_010 Hb_004218_230 Hb_004218_230 Hb_017661_020--Hb_004218_230 Hb_005203_010--Hb_031862_090 Hb_005203_010--Hb_002282_030 Hb_000891_060 Hb_000891_060 Hb_005203_010--Hb_000891_060 Hb_000616_060 Hb_000616_060 Hb_005203_010--Hb_000616_060 Hb_000575_010 Hb_000575_010 Hb_005203_010--Hb_000575_010 Hb_031862_090--Hb_002282_030 Hb_031862_090--Hb_000891_060 Hb_031862_090--Hb_000616_060 Hb_031862_090--Hb_000575_010 Hb_004341_010 Hb_004341_010 Hb_004837_170--Hb_004341_010 Hb_031954_010 Hb_031954_010 Hb_004837_170--Hb_031954_010 Hb_004724_070 Hb_004724_070 Hb_004837_170--Hb_004724_070 Hb_004837_170--Hb_002282_030 Hb_002282_030--Hb_000891_060 Hb_002282_030--Hb_000616_060 Hb_002282_030--Hb_000575_010 Hb_009543_040 Hb_009543_040 Hb_002282_030--Hb_009543_040 Hb_001157_130 Hb_001157_130 Hb_002282_030--Hb_001157_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.035171 15.2847 0.324134 10.9848 0 0.0461879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.8482 0

CAGE analysis