Hb_027450_010

Information

Type -
Description -
Location Contig27450: 572-3319
Sequence    

Annotation

kegg
ID pop:POPTR_0015s02060g
description POPTRDRAFT_807852; hypothetical protein
nr
ID XP_011003872.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
swissprot
ID Q5G1T1
description Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1
trembl
ID A0A067JII0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23574 PE=4 SV=1
Gene Ontology
ID GO:0004672
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28748: 1903-2057 , PASA_asmbl_28749: 2759-3152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027450_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
2 Hb_000244_160 0.0802486472 - - PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Jatropha curcas]
3 Hb_034271_030 0.0890172174 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
4 Hb_001019_060 0.0953846729 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
5 Hb_000538_200 0.100962006 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
6 Hb_002678_020 0.1050952447 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
7 Hb_001258_040 0.1072147494 - - hypothetical protein JCGZ_12578 [Jatropha curcas]
8 Hb_004452_010 0.1089049743 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
9 Hb_007426_030 0.1097766651 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
10 Hb_000832_020 0.1119452368 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
11 Hb_001675_180 0.1136696297 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
12 Hb_000808_230 0.1138140783 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
13 Hb_000796_220 0.1141439119 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
14 Hb_001507_020 0.1155761238 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
15 Hb_000577_010 0.1171496706 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
16 Hb_000723_260 0.1185808102 - - ethylene insensitive protein, putative [Ricinus communis]
17 Hb_000261_350 0.1186181801 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
18 Hb_085781_010 0.1187418933 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
19 Hb_001226_020 0.1200123934 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]
20 Hb_001623_510 0.120107355 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_027450_010 Hb_027450_010 Hb_000244_160 Hb_000244_160 Hb_027450_010--Hb_000244_160 Hb_034271_030 Hb_034271_030 Hb_027450_010--Hb_034271_030 Hb_001019_060 Hb_001019_060 Hb_027450_010--Hb_001019_060 Hb_000538_200 Hb_000538_200 Hb_027450_010--Hb_000538_200 Hb_002678_020 Hb_002678_020 Hb_027450_010--Hb_002678_020 Hb_001258_040 Hb_001258_040 Hb_027450_010--Hb_001258_040 Hb_000244_160--Hb_034271_030 Hb_000723_260 Hb_000723_260 Hb_000244_160--Hb_000723_260 Hb_010417_050 Hb_010417_050 Hb_000244_160--Hb_010417_050 Hb_000577_010 Hb_000577_010 Hb_000244_160--Hb_000577_010 Hb_000707_050 Hb_000707_050 Hb_000244_160--Hb_000707_050 Hb_012490_040 Hb_012490_040 Hb_034271_030--Hb_012490_040 Hb_010436_020 Hb_010436_020 Hb_034271_030--Hb_010436_020 Hb_001226_020 Hb_001226_020 Hb_034271_030--Hb_001226_020 Hb_034271_030--Hb_000723_260 Hb_007426_030 Hb_007426_030 Hb_001019_060--Hb_007426_030 Hb_000103_180 Hb_000103_180 Hb_001019_060--Hb_000103_180 Hb_001019_060--Hb_000538_200 Hb_002079_010 Hb_002079_010 Hb_001019_060--Hb_002079_010 Hb_005489_110 Hb_005489_110 Hb_001019_060--Hb_005489_110 Hb_000808_230 Hb_000808_230 Hb_001019_060--Hb_000808_230 Hb_004600_040 Hb_004600_040 Hb_000538_200--Hb_004600_040 Hb_001157_060 Hb_001157_060 Hb_000538_200--Hb_001157_060 Hb_000815_210 Hb_000815_210 Hb_000538_200--Hb_000815_210 Hb_001736_040 Hb_001736_040 Hb_000538_200--Hb_001736_040 Hb_011673_030 Hb_011673_030 Hb_000538_200--Hb_011673_030 Hb_000421_260 Hb_000421_260 Hb_000538_200--Hb_000421_260 Hb_001507_020 Hb_001507_020 Hb_002678_020--Hb_001507_020 Hb_007483_100 Hb_007483_100 Hb_002678_020--Hb_007483_100 Hb_000427_050 Hb_000427_050 Hb_002678_020--Hb_000427_050 Hb_000204_210 Hb_000204_210 Hb_002678_020--Hb_000204_210 Hb_000000_250 Hb_000000_250 Hb_002678_020--Hb_000000_250 Hb_002311_040 Hb_002311_040 Hb_002678_020--Hb_002311_040 Hb_022693_060 Hb_022693_060 Hb_001258_040--Hb_022693_060 Hb_000635_250 Hb_000635_250 Hb_001258_040--Hb_000635_250 Hb_001545_120 Hb_001545_120 Hb_001258_040--Hb_001545_120 Hb_001258_040--Hb_000000_250 Hb_000022_250 Hb_000022_250 Hb_001258_040--Hb_000022_250 Hb_001258_040--Hb_007426_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60016 1.20057 0.559373 0.761242 2.14252 4.04988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.980245 2.24827 3.24245 1.39628 1.56383

CAGE analysis