Hb_027472_050

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig27472: 13354-14163
Sequence    

Annotation

kegg
ID rcu:RCOM_1574650
description ccaat-binding transcription factor, putative
nr
ID XP_012087361.1
description PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
swissprot
ID Q8LCG7
description Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2 SV=2
trembl
ID A0A067JQF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22608 PE=4 SV=1
Gene Ontology
ID GO:0005737
description nuclear transcription factor y subunit c-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28756: 13096-16022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_050 0.0 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
2 Hb_002864_010 0.071291786 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
3 Hb_000166_130 0.0750110783 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003371_110 0.0799014815 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
5 Hb_004412_010 0.0818313993 - - -
6 Hb_005731_030 0.0860319278 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
7 Hb_000035_290 0.0880889581 - - RNA recognition motif-containing family protein [Populus trichocarpa]
8 Hb_005496_110 0.0884458622 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
9 Hb_031284_040 0.0887967572 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
10 Hb_003029_110 0.0896960025 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
11 Hb_000343_120 0.0900334136 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
12 Hb_000170_150 0.09022822 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
13 Hb_010222_050 0.0912227458 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
14 Hb_006882_020 0.0916572852 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000453_060 0.0922145617 - - PREDICTED: pentatricopeptide repeat-containing protein At4g11690 [Jatropha curcas]
16 Hb_000264_030 0.0929249615 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
17 Hb_007054_060 0.0933050784 - - -
18 Hb_000190_120 0.0944904861 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
19 Hb_000011_230 0.0955153542 - - PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Jatropha curcas]
20 Hb_004602_040 0.0959916335 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_027472_050 Hb_027472_050 Hb_002864_010 Hb_002864_010 Hb_027472_050--Hb_002864_010 Hb_000166_130 Hb_000166_130 Hb_027472_050--Hb_000166_130 Hb_003371_110 Hb_003371_110 Hb_027472_050--Hb_003371_110 Hb_004412_010 Hb_004412_010 Hb_027472_050--Hb_004412_010 Hb_005731_030 Hb_005731_030 Hb_027472_050--Hb_005731_030 Hb_000035_290 Hb_000035_290 Hb_027472_050--Hb_000035_290 Hb_000264_030 Hb_000264_030 Hb_002864_010--Hb_000264_030 Hb_001080_230 Hb_001080_230 Hb_002864_010--Hb_001080_230 Hb_000170_150 Hb_000170_150 Hb_002864_010--Hb_000170_150 Hb_000003_190 Hb_000003_190 Hb_002864_010--Hb_000003_190 Hb_013399_070 Hb_013399_070 Hb_002864_010--Hb_013399_070 Hb_003029_110 Hb_003029_110 Hb_000166_130--Hb_003029_110 Hb_000343_120 Hb_000343_120 Hb_000166_130--Hb_000343_120 Hb_001195_320 Hb_001195_320 Hb_000166_130--Hb_001195_320 Hb_000166_130--Hb_000035_290 Hb_000166_130--Hb_003371_110 Hb_001199_100 Hb_001199_100 Hb_000166_130--Hb_001199_100 Hb_014361_070 Hb_014361_070 Hb_003371_110--Hb_014361_070 Hb_003371_110--Hb_001195_320 Hb_002823_030 Hb_002823_030 Hb_003371_110--Hb_002823_030 Hb_000190_120 Hb_000190_120 Hb_003371_110--Hb_000190_120 Hb_004935_030 Hb_004935_030 Hb_003371_110--Hb_004935_030 Hb_007575_050 Hb_007575_050 Hb_004412_010--Hb_007575_050 Hb_023386_020 Hb_023386_020 Hb_004412_010--Hb_023386_020 Hb_003878_070 Hb_003878_070 Hb_004412_010--Hb_003878_070 Hb_165928_020 Hb_165928_020 Hb_004412_010--Hb_165928_020 Hb_016898_010 Hb_016898_010 Hb_004412_010--Hb_016898_010 Hb_023386_040 Hb_023386_040 Hb_004412_010--Hb_023386_040 Hb_010222_050 Hb_010222_050 Hb_005731_030--Hb_010222_050 Hb_005731_030--Hb_003029_110 Hb_123352_020 Hb_123352_020 Hb_005731_030--Hb_123352_020 Hb_000820_170 Hb_000820_170 Hb_005731_030--Hb_000820_170 Hb_002518_280 Hb_002518_280 Hb_005731_030--Hb_002518_280 Hb_010618_010 Hb_010618_010 Hb_005731_030--Hb_010618_010 Hb_000035_290--Hb_000343_120 Hb_025194_040 Hb_025194_040 Hb_000035_290--Hb_025194_040 Hb_005496_110 Hb_005496_110 Hb_000035_290--Hb_005496_110 Hb_000395_130 Hb_000395_130 Hb_000035_290--Hb_000395_130 Hb_002784_110 Hb_002784_110 Hb_000035_290--Hb_002784_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.221 47.6295 17.3401 21.3079 37.2833 59.5444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.7985 35.9132 20.6076 27.7508 32.3131

CAGE analysis